Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 27 Aligned Residues 300 % Identity 13% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.
Query SS confidence																									.	.																														.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	.	.	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E
Query Conservation																									.	.																														.
Alig confidence																									.	.													.	.	.	.														.
Template Conservation																																							.	.	.	.
Template Sequence		T	P	F	Y	L	Y	D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	.	.	.	.	N	L	S	I	L	S	L	L	A	H	L	E	S	G	A	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K	P	Y	R	I	V	F	S
Template Known Secondary structure		S	S																			T	T		S	S								G	G	G			.	.	.	.											T	T						S	S										T	T			G	G	G
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.															.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	F	.	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	.	.	D	E	P	V	T	V	W	M	K	L	D	T	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y
Query Conservation					.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E	K	E	A	L	E	M	F
Template Known Secondary structure			T	T												T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.
Query Sequence		H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y
Query Conservation																																														.	.	.	.	.	.
Alig confidence											.													.																						.	.	.	.	.	.
Template Conservation											.													.
Template Sequence		L	W	A	K	K	S	A	F	L	.	E	P	V	S	V	H	F	H	I	G	S	Q	.	L	L	D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	V	S	Y	E	N	E	E	T	I	K	L	Y	D	Y	A	Q	G	I	L
Template Known Secondary structure								S	S		.										B	S	S	.	B																							T	T												B				T	T	S
Template Predicted Secondary structure											.													.
Template SS confidence
		169	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																	.	.	.																																																													.	.
Query SS confidence																	.	.	.																																																													.	.
Query Sequence		G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	.	.	.	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	.	.
Query Conservation																	.	.	.																																																													.	.
Alig confidence																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	L	Q	G	L	D	L	T	I	I	C	E	P	G	R	S	I	V	A	E	S	G	E	L	I	T	Q	V	L	Y	E	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	R	F	V	I	V	D	A	G	M	N	D	F	L	R	P	S	L	Y	H	A	K	H	A	I	R	V	I
Template Known Secondary structure				T	T	T															T	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S			T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
					291	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.													.	.
Query SS confidence		.	.	.													.	.
Query Sequence		.	.	.	N	G	R	E	V	P	I	V	G	R	V	A	.	.	M	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation		.	.	.													.	.
Alig confidence		.	.	.													.	.										.
Template Conservation																												.
Template Sequence		T	P	S	E	I	S	P	C	D	V	V	G	P	V	C	E	S	S	D	T	F	L	K	D	A	H	.	L	P	E	L	E	P	G	D	K	I	A	I	E	K
Template Known Secondary structure		S												S	S	S	S	T	T									.						T	T							S
Template Predicted Secondary structure																												.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions