Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 35 Aligned Residues 298 % Identity 17% Template c2pljA_ PDB info PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus Resolution 1.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E	G	F
Query Conservation																																																						.
Alig confidence																																					.	.	.	.														.
Template Conservation																																					.	.	.	.
Template Sequence		A	P	L	L	L	L	D	C	D	V	I	R	Q	Q	Y	R	A	L	K	N	A	L	P	N	V	T	L	H	Y	A	L	K	P	L	P	.	.	.	.	H	P	V	V	V	R	T	L	L	A	E	G	A	S	F	D	L	A	T	T	G	E	V	E	L	V	A	S	E	G	V	P	A	D	L	T	I	H	T	H	P
Template Known Secondary structure		S	S																				S	T	T							S	T	T			.	.	.	.												T							S										T	T			G	G	G						S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
			82	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.															.
Query SS confidence		.															.
Query Sequence		.	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H
Query Conservation		.															.
Alig confidence		.															.																				.	.										.																					.				.
Template Conservation																																					.	.										.																					.				.
Template Sequence		I	K	R	D	A	D	I	R	D	A	L	A	Y	G	C	N	V	F	V	V	D	N	L	N	E	L	E	K	F	K	A	Y	R	D	D	.	.	V	E	L	L	V	R	L	S	F	.	S	K	K	F	G	C	S	P	E	Q	A	L	V	I	I	E	T	A	K	E	.	W	N	I	.	R	I	K	G	L	S	F	H
Template Known Secondary structure		S													T								S						T	T	G	G	G	T	T	T	.	.							B			.				S		B															.	T	T		.
Template Predicted Secondary structure																																					.	.										.																					.				.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.		.	.	180	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																					.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																																					.	.	.	.	.	.	.	.
Query Sequence		F	A	R	A	D	E	P	K	C	G	A	.	.	.	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	.	.	.	.	.	.	.	.	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D
Query Conservation													.	.	.																																					.	.	.	.	.	.	.	.
Alig confidence													.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	S	Q	T	T	N	P	N	K	Y	V	E	A	I	H	T	C	R	H	V	M	E	Q	V	V	E	R	G	L	P	A	L	S	T	L	D	I	G	G	G	F	P	V	N	Y	T	Q	Q	V	M	P	I	D	Q	F	C	A	P	I	N	E	A	L	S	L	L	P	E	T	V	H	V	L	A	E	P	G	R	F
Template Known Secondary structure				T	T				T																				T	T																	S	S	S																	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.								.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	.	.	.	.	.	.	.	R	E	V	P	I	V	G	R	V
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	C	A	P	A	V	T	S	V	A	S	V	M	G	Q	A	E	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	I	W	Y	Y	L	D	D	G	I	Y	G	S	F	S	G	L	M	F	D	D	A	R	Y	P	L	T	T	I	K	Q	G	G	E	L	I	P	S	V	L	S	G	P	T
Template Known Secondary structure			.		G	G	G														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S			T	T	T	G	G	G					S									S			S	S										S	S
Template Predicted Secondary structure			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.																.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		302	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		A	M	.	.	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation				.	.
Alig confidence				.	.								.
Template Conservation													.
Template Sequence		C	D	S	V	D	V	I	A	E	N	I	.	L	L	P	K	L	N	N	G	D	L	V	I	G	R	T
Template Known Secondary structure		S		T	T								.							T	T						S	S
Template Predicted Secondary structure													.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions