Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 25 Aligned Residues 300 % Identity 15% Template c2p3eA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus Resolution 1.99 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E	G	F
Query Conservation																																																						.
Alig confidence																																					.	.	.	.														.
Template Conservation																																					.	.	.	.
Template Sequence		T	P	L	Y	V	Y	S	S	N	F	I	K	E	R	F	E	A	Y	R	K	A	F	P	D	A	L	I	C	Y	A	V	K	A	N	F	.	.	.	.	N	P	H	L	V	K	L	L	G	E	L	G	A	G	A	D	I	V	S	G	G	E	L	Y	L	A	K	K	A	G	I	P	P	E	R	I	V	Y	A	G	V
Template Known Secondary structure		S	S																				S	T	T	S						G	G	G			.	.	.	.											T	T						S	S										T	T			G	G	G					S	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		82		.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure			.														.																			.	.
Query SS confidence			.														.																			.	.
Query Sequence		F	.	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	.	.	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V
Query Conservation			.														.																			.	.
Alig confidence			.														.																			.	.													.	.																								.
Template Conservation																																																		.	.																								.
Template Sequence		G	K	T	E	K	E	L	T	D	A	V	D	S	E	I	L	M	F	N	V	E	S	R	Q	E	L	D	V	L	N	E	I	A	G	K	L	G	K	K	A	R	I	A	I	R	V	N	P	.	.	S	K	F	G	V	D	I	R	E	A	Q	K	E	Y	E	Y	A	S	K	L	E	N	L	.	E	I	V	G	I	H
Template Known Secondary structure														T	T		S																					T												.	.			S				G	G	G										T		T	T		.
Template Predicted Secondary structure																																																		.	.																								.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																	.	.	.																																												.	.	.
Query SS confidence																																	.	.	.																																												.	.	.
Query Sequence		S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	P	G	Q	.	.	.	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	.	.	.
Query Conservation																																	.	.	.																																												.	.	.
Alig confidence								.																									.	.	.																																												.	.	.
Template Conservation								.
Template Sequence		C	H	I	G	S	Q	.	I	L	D	I	S	P	Y	R	E	A	V	E	K	V	V	S	L	Y	E	S	L	T	Q	K	G	F	D	I	K	Y	L	D	I	G	G	G	L	G	I	K	Y	K	P	E	D	K	E	P	A	P	Q	D	L	A	D	L	L	K	D	L	L	V	K	A	K	I	I	L	E	P	G	R	S
Template Known Secondary structure						S	S	.	B	S	S		T																			T	T												B					S	T	T														T	T	T				S							S
Template Predicted Secondary structure								.
Template SS confidence
		203	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
				232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.																																																												.	.	.	.														.	.
Query SS confidence		.	.																																																												.	.	.	.														.	.
Query Sequence		.	.	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	.	.	.	.	N	G	R	E	V	P	I	V	G	R	V	A	M	.	.
Query Conservation		.	.																																																												.	.	.	.														.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.														.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	M	G	N	A	G	I	L	I	T	Q	V	Q	F	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	G	S	K	H	F	I	I	V	D	A	G	M	N	D	L	I	R	P	S	I	Y	N	A	Y	H	H	I	I	P	V	E	T	K	E	V	V	A	D	I	V	G	P	I	C	E	T	G
Template Known Secondary structure				G	G	G												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S			T	T	T																S	B											S	S	S	S	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		D	F	L	A	L	D	R	E	.	I	E	E	V	Q	R	G	E	Y	L	A	V	L	S
Template Known Secondary structure										.						T	T							S
Template Predicted Secondary structure										.
Template SS confidence
		352	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions