Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 4 Aligned Residues 352 % Identity 46% Template c2odoC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		M	Q	A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	.	P	D	A	D	A	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E
Query Conservation																																																			.
Alig confidence																													.	.																					.
Template Conservation																													.	.
Template Sequence		M	R	P	A	R	A	L	I	D	L	Q	A	L	R	H	N	Y	Q	L	A	R	E	V	T	G	A	K	.	.	A	L	A	V	I	A	D	A	Y	G	H	G	A	V	R	C	A	Q	A	L	E	A	E	A	D	G	F	A	V	A	C	I	E	E	A	L	E	L	R	A	A	G	I	R	A	P	I	L	L	L	E
Template Known Secondary structure																											S		.	.											T										G	G	G		S					S	S										T	T			S					T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H
Query Conservation
Alig confidence																																								.																																	.
Template Conservation																																								.																																	.
Template Sequence		G	F	F	E	A	D	E	L	P	L	I	V	E	H	D	F	W	C	V	V	H	S	L	W	Q	L	D	A	I	E	Q	A	R	L	A	K	P	I	.	H	V	W	L	L	D	S	G	M	H	R	V	G	L	H	P	N	D	Y	K	A	A	Y	Q	R	L	Q	A	S	A	N	V	.	A	K	I	V	L	M	S	H
Template Known Secondary structure				S	S	G	G	G							T	T							S										S			S	S			.							S	S	S		S	S																T	S	S	S		.
Template Predicted Secondary structure																																								.																																	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		F	A	R	A	D	E	L	D	C	T	R	S	V	E	Q	V	A	V	F	L	G	A	R	A	D	L	T	A	E	I	S	L	R	N	S	P	A	V	L	G	W	P	R	V	P	S	D	W	V	R	P	G	L	M	L	Y	G	S	S	P	F	D	E	P	Q	A	T	A	S	.	R	L	Q	P	V	M	T	L	E	S
Template Known Secondary structure			S	S	T	T		S	S																T	T																	T	T	S			S					S	G	G	G	G	T					S	S			T	T	G	G	.	G
Template Predicted Secondary structure																																																																							.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V	G	R	V	A	M	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	I	C	V	R	E	L	P	A	G	E	P	V	G	Y	G	A	R	F	I	T	P	K	P	M	R	I	G	V	V	A	M	G	Y	A	D	G	Y	P	R	Q	A	P	T	G	T	P	V	F	V	D	G	V	R	S	Q	L	L	G	R	V	S	M	D	M	L	C	I	D	L	T	D	V	P	Q	A	G	L	G
Template Known Secondary structure											T	T		B		S	G	G	G			B		S	S								S			T	T	T	T			T	T			T	T						T	T					B		S				S	S							S	S		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	V	I	L	W	G	E	G	L	P	V	E	R	I	A	E	M	T	K	V	S	A	Y	E	L	I	T	R	L	T	S	R	V	A	M	K	Y	V
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		S	T	V	E	L	W	G	K	N	I	L	A	S	E	V	A	T	A	A	D	T	I	P	Y	Q	I	F	C	N	L	K	.	R	V	P	R	L	Y	S
Template Known Secondary structure								S	S	S	S									T	T	S								T			.	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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