Job Description P0A6B4 Confidence 99.98% Date Thu Jan 5 11:02:45 GMT 2012 Rank 37 Aligned Residues 308 % Identity 17% Template c2o0tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Resolution 2.33 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E	G	F
Query Conservation																																																						.
Alig confidence																																					.	.	.	.														.
Template Conservation																																					.	.	.	.
Template Sequence		T	P	L	F	V	I	D	E	D	D	F	R	S	R	C	R	E	T	A	A	A	F	G	S	G	A	N	V	H	Y	A	A	A	F	L	.	.	.	.	C	S	E	V	A	R	W	I	S	E	E	G	L	C	L	D	V	C	T	G	G	E	L	A	V	A	L	H	A	S	F	P	P	E	R	I	T	L	H	G	N
Template Known Secondary structure		S	S																				T	T	S	G	G	G	B								.	.	.	.												T							S										T	T			G	G	G						S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
			82	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.															.	130	.	.	.	.	.	.	.	.	.	140			.
Predicted Secondary structure		.															.																			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence		.															.																			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		.	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	.	.	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	V	R	P	E	Q	A	E	A	F	.	.	Y
Query Conservation		.															.																			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence		.															.																			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		N	K	S	V	S	E	L	T	A	A	V	K	A	G	V	G	H	I	V	V	D	S	M	T	E	I	E	R	L	D	A	I	A	G	E	A	G	I	V	Q	D	V	L	V	R	L	T	V	G	V	E	A	H	T	H	E	F	I	S	T	A	H	E	D	Q	K	F	G	L	S	V	A	S	G	A	A	M	A	A	V
Template Known Secondary structure		S													T		S						S															T												S						T						S	S			S	S	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.												.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	.	Q	S	H	F	D	W	V	R
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence											.													.																						.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation											.													.
Template Sequence		R	R	V	F	A	T	D	H	L	.	R	L	V	G	L	H	S	H	I	G	S	Q	.	I	F	D	V	D	G	F	E	L	A	A	H	R	V	I	G	L	L	R	D	V	V	G	E	F	G	P	E	K	T	A	Q	I	A	T	V	D	L	G	G	G	L	G	I	S	Y	L	P	S	D	D	P	P	P	I	A	E
Template Known Secondary structure								S	S		.													.				S																										S	T	T										B				S	S	T	T
Template Predicted Secondary structure											.													.
Template SS confidence
		197	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		210	.	.	.	.	.											.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	I	I	L	Y	.	.	.	.	.	.	.	.	.	.	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P
Query Conservation								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	K	L	G	T	I	V	S	D	E	S	T	A	V	G	L	P	T	P	K	L	V	V	E	P	G	R	A	I	A	G	P	G	T	I	T	L	Y	E	V	G	T	V	K	D	V	D	V	S	A	.	.	.	.	.	.	.	.	.	.	T	A	H	R	R	Y	V	S	V	D	G	G	M	S	D	N	I	R
Template Known Secondary structure																	T	T								B			S					S	T	T																S	S	.	.	.	.	.	.	.	.	.	.	S									S			T	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.											.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.														.	.
Query SS confidence													.	.	.	.	.	.	.	.														.	.
Query Sequence		R	A	A	P	S	G	T	P	V	L	V	.	.	.	.	.	.	.	.	N	G	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation													.	.	.	.	.	.	.	.														.	.
Alig confidence													.	.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		T	A	L	Y	G	A	Q	Y	D	V	R	L	V	S	R	V	S	D	A	P	P	V	P	A	R	L	V	G	K	H	C	E	S	G	D	I	I	V	R	D	T	W	V	P	D	D	I	R	P	G	D	L	V	A	V	A	A
Template Known Secondary structure															S	S				S										S	S	S	S	T	T											T	T			T	T						S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions