Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 8 Aligned Residues 355 % Identity 36% Template c1vftA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		Q	A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	.	.	P	D	A	D	A	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E
Query Conservation																																																		.	.
Alig confidence																																																		.	.																														.
Template Conservation																																																																																	.
Template Sequence		T	R	V	Y	A	E	I	D	L	D	A	V	R	A	N	V	R	A	L	R	A	R	A	P	R	S	A	L	M	A	V	V	K	S	N	A	Y	G	H	G	A	V	P	C	A	R	A	A	Q	E	A	G	A	A	W	L	G	T	A	T	P	E	E	A	L	E	L	R	A	A	G	I	Q	G	R	I	M	C	W	.
Template Known Secondary structure		S	S																			T	T	S	T	T	S													T													T		S					S	S										T	T			S						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																			.																																		.	.	.
Query SS confidence																																			.																																		.	.	.
Query Sequence		G	F	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	.	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	.	.	.	Q	C	K	N	V	R	Q	P	V	N
Query Conservation																																			.																																		.	.	.
Alig confidence																																			.																																		.	.	.						.
Template Conservation																																																																													.
Template Sequence		L	W	T	P	G	G	P	W	R	E	A	I	E	T	D	I	D	V	S	V	S	G	M	W	A	L	D	E	V	R	A	A	A	R	A	A	G	R	T	A	R	I	Q	L	A	D	T	G	L	G	R	N	G	C	Q	P	A	D	W	A	E	L	V	G	A	A	V	A	A	Q	A	E	G	T	V	.	Q	V	T	G
Template Known Secondary structure					T	T									T	T							S														T	T	S									S	S			S	S	S			G	G	G														T	T	S		.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F
Query Conservation																																.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.
Template Conservation
Template Sequence		V	W	S	H	F	A	C	A	D	E	P	G	H	P	S	I	R	L	Q	L	D	A	F	R	D	M	L	A	Y	A	E	K	E	G	V	D	P	E	V	R	H	I	A	N	S	P	A	T	L	T	L	P	E	T	H	F	D	L	V	R	T	G	L	A	V	Y	G	V	S	P	S	P	E	L	G	T	P	A	Q	L
Template Known Secondary structure							S	S	T	T	S	T	T																					T	T				S														G	G	G		S	S						G	G	G	G	T			S		G	G	G			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V	G	R	V	A	M	D	M	I	C	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	R	P	A	M	T	L	R	A	S	L	A	L	V	K	T	V	P	A	G	H	G	V	S	Y	G	H	H	Y	V	T	E	S	E	T	H	L	A	L	V	P	A	G	Y	A	D	G	I	P	R	N	A	S	G	R	G	P	V	L	V	A	G	K	I	R	R	A	A	G	R	I	A	M	D	Q	F	V	V	D
Template Known Secondary structure		T																			T	T				S	G	G	G					S	S	S							S			T	T	T	T			G	G	G	T	T	T						T	T					B		S				S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G	.	.	.	.	E	G	L	P	V	E	R	I	A	E	M	T	K	V	S	A	Y	E	L	I	T	R	L	T	S	R	V	A	M	K	Y	V	D
Query Conservation																			.	.	.	.
Alig confidence					.														.	.	.	.
Template Conservation					.
Template Sequence		L	G	E	.	D	L	A	E	A	G	D	E	A	V	I	L	G	D	A	E	R	G	E	P	T	A	E	D	W	A	Q	A	A	H	T	I	A	Y	E	I	V	T	R	I	G	G	R	V	P	R	V	Y	L	G
Template Known Secondary structure				T	.					T	T									G	G	G	T											T	T	S								T			S	S	S						S
Template Predicted Secondary structure					.
Template SS confidence
		325	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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