Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 31 Aligned Residues 314 % Identity 17% Template c1tufA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																											.
Query SS confidence																												.	.	.	.	.	.	.																											.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	.	.	.	.	.	.	.	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P
Query Conservation																												.	.	.	.	.	.	.																											.
Alig confidence																												.	.	.	.	.	.	.										.	.	.	.														.
Template Conservation																																												.	.	.	.
Template Sequence		T	P	L	Y	V	M	S	E	E	Q	I	K	I	N	Y	N	R	Y	I	E	A	F	K	R	W	E	E	E	T	G	K	E	F	I	V	A	Y	A	Y	A	N	A	.	.	.	.	N	L	A	I	T	R	L	L	A	K	L	G	C	G	A	D	V	V	S	G	G	E	L	Y	I	A	K	L	S	N	V	P	S	K
Template Known Secondary structure		S	S																					T	T					S														.	.	.	.											T	T							S										T	T			G	G
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.															.	.	130	.	.	.	.	.	.
Predicted Secondary structure										.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	L	L	E	G	F	F	.	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	.	.	D	E	P	V	T	V	W	M	K	L	D	T	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	L	G	V	R	P	E	Q
Query Conservation										.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.														.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	V	F	N	G	N	C	K	T	K	E	E	I	I	M	G	I	E	A	N	I	R	A	F	N	V	D	S	I	S	E	L	I	L	I	N	E	T	A	K	E	L	G	E	T	A	N	V	A	F	R	I	N	P	N	V	N	P	K	T	H	P	K	I	S	T	G	L	K	K	N	K	F	G	L	D	V	E	S
Template Known Secondary structure		G						S													T	T		S																					T								B							T	T	T	S										S	S		S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
				137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure		.	.																																																		.	.	.
Query SS confidence		.	.																																																		.	.	.
Query Sequence		.	.	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G
Query Conservation		.	.																																																		.	.	.
Alig confidence		.	.															.												.																							.	.	.																		.
Template Conservation																		.												.																																											.
Template Sequence		G	I	A	M	K	A	I	K	M	A	L	E	M	E	Y	V	.	N	V	V	G	V	H	C	H	I	G	S	.	Q	L	T	D	I	S	P	F	I	E	E	T	R	K	V	M	D	F	V	V	E	L	K	E	E	G	I	E	I	E	D	V	N	L	G	G	G	L	G	I	P	Y	.	Y	K	D	K	Q	I	P	T
Template Known Secondary structure		T											T		S	S		.											S	.	S	B																						T	T	T				S								B					.	S	S	S	S
Template Predicted Secondary structure																		.												.																																											.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		Q	K	D	L	A	D	A	I	I	N	T	M	L	K	Y	K	D	K	.	.	V	E	M	P	N	L	I	L	E	P	G	R	S	L	V	A	T	A	G	Y	L	L	G	K	V	H	H	I	K	E	T	P	V	T	K	W	V	M	I	D	A	G	M	N	D	M	M	R	P	A	M	Y	E	A	Y	H	H	I	I	N
Template Known Secondary structure															T	T	T	T	T	.	.	S										S					G	G	G														S	S							S			T	T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		292							.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.												.	.
Query SS confidence			.	.	.	.	.	.												.	.
Query Sequence		G	.	.	.	.	.	.	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation			.	.	.	.	.	.												.	.
Alig confidence			.	.	.	.	.	.												.	.									.
Template Conservation																														.
Template Sequence		C	K	V	K	N	E	K	E	V	V	S	I	A	G	G	L	C	E	S	S	D	V	F	G	R	D	R	E	.	L	D	K	V	E	V	G	D	V	L	A	I	F	D
Template Known Secondary structure		S	B			S										S	S	S		T	T									.						T	T
Template Predicted Secondary structure																														.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions