Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 23 Aligned Residues 310 % Identity 11% Template c1njjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 Resolution 2.45 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E	G	F
Query Conservation																																																						.
Alig confidence																																					.	.	.	.														.
Template Conservation																																					.	.	.	.
Template Sequence		D	P	F	F	V	A	D	L	G	D	I	V	R	K	H	E	T	W	K	K	C	L	P	R	V	T	P	F	Y	A	V	K	C	N	D	.	.	.	.	D	W	R	V	L	G	T	L	A	A	L	G	T	G	F	D	C	A	S	N	T	E	I	Q	R	V	R	G	I	G	V	P	P	E	K	I	I	Y	A	N	P
Template Known Secondary structure																								T	T							G	G	G			.	.	.	.											T	T							S										T	T			G	G	G						S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		82		.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.														.
Query SS confidence			.														.
Query Sequence		F	.	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H
Query Conservation			.														.
Alig confidence			.														.																			.	.	.	.																															.				.
Template Conservation																																				.	.	.	.																															.				.
Template Sequence		C	K	Q	I	S	H	I	R	Y	A	R	D	S	G	V	D	V	M	T	F	D	C	V	D	E	L	E	K	V	A	K	T	H	P	.	.	.	.	K	A	K	M	V	L	R	I	S	T	V	K	F	G	A	K	V	E	D	C	R	F	I	L	E	Q	A	K	K	L	.	N	I	D	.	V	T	G	V	S	F	H
Template Known Secondary structure		S													T								S												T	.	.	.	.	T							B					S		B		G	G	G											T	.	T			.
Template Predicted Secondary structure																																				.	.	.	.																															.				.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180		.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P
Query Conservation																												.	.	.	.	.	.
Alig confidence						.																						.	.	.	.	.	.																															.
Template Conservation						.																																																										.
Template Sequence		V	G	S	G	.	S	T	D	A	S	T	F	A	Q	A	I	S	D	S	R	F	V	F	D	M	G	T	E	L	G	F	N	M	H	I	L	D	I	G	G	G	F	P	G	T	R	D	A	P	L	K	F	E	E	I	A	G	V	I	N	N	A	.	L	E	K	H	F	P	P	D	L	K	L	T	I	V	A	E	P
Template Known Secondary structure				S		.		S		T																				T	T														S	S	T	T	S	S	S													.					S				T	T
Template Predicted Secondary structure						.																																																										.
Template SS confidence
		198	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G
Query Conservation																																																																								.	.
Alig confidence																																																									.															.	.
Template Conservation																																																									.
Template Sequence		G	R	Y	Y	V	A	S	A	F	T	L	A	V	N	V	I	A	K	K	V	T	Q	S	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H	A	V	V	R	P	L	P	Q	R	E	P	I	.	E	K	L	Y	P	S	S	V	W	G	P	T	C	D	G	L	D	Q	I	V	E	R	Y	Y
Template Known Secondary structure		S					G	G	G												B				B					S			T	T	T	G	G	G					S									S	S				.											S	S	S		T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	P	E	M	Q	V	G	E	W	L	L	F	E	D
Template Known Secondary structure		.						T	T							S
Template Predicted Secondary structure		.
Template SS confidence
			372	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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