Job Description P0A6B4 Confidence 99.95% Date Thu Jan 5 11:02:45 GMT 2012 Rank 38 Aligned Residues 318 % Identity 17% Template c1knwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.
Predicted Secondary structure																																																						.																				.	.	.	.	.
Query SS confidence																																																						.																				.	.	.	.	.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	.	.	.	.	.	P	V	L
Query Conservation																																																						.																				.	.	.	.	.
Alig confidence																								.	.	.											.	.	.	.														.																				.	.	.	.	.
Template Conservation																								.	.	.											.	.	.	.
Template Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V
Template Known Secondary structure		S	S															T	T	T	T	S	S	.	.	.						G	G	G			.	.	.	.											T	T							S										T	T			T	T	T		T	T	S
Template Predicted Secondary structure																								.	.	.											.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.													.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	E	G	F	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I
Template Known Secondary structure					S														T						S	S											S	T	T										S			S	S		T	T	S			S	S	S	T	T				S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.											.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	.	.	.	.	.	.	.	.	.	.	D	W	V	R	P	G	I	I	L
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.
Alig confidence				.				.												.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation				.				.												.	.
Template Sequence		Q	R	.	H	H	L	.	Q	L	V	G	I	H	M	H	I	G	S	.	.	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q
Template Known Secondary structure				.	T	T		.												.	.	T	T																				T				S													S	T	T
Template Predicted Secondary structure				.				.												.	.
Template SS confidence
		179	180		.	.	.		.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																		.	.	.																																																													.
Query SS confidence																		.	.	.																																																													.
Query Sequence		Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	.	.	.	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	.
Query Conservation																		.	.	.																																																													.
Alig confidence																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A
Template Known Secondary structure							T	S									S					G	G	G														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S			T	T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
													291	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.	.									.	.	.	.	.	.																																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.														.	.									.	.	.	.	.	.																																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	N	G	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G	.	.	.	.	.	.	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G	E	G	L	P	V	E	R	I	A	E	M	T	K	V	S	A	Y	E	L	I	T	R	L	T	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.														.	.									.	.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.									.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	Y	G	A	S	M	S	S	N	Y
Template Known Secondary structure				T	T					T	T											S	S	S	S	T	T		B	S	S	B		T	T	S		B										T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	G	G	G				T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.														.	.	.	.	.	380	.	.	.	.	.	.
					351	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	R	V	A	M	K	Y	V	D
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		N	S	R	P	L	L	P	E	V	L	F	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions