Job Description P0A6B4 Confidence 99.87% Date Thu Jan 5 11:02:45 GMT 2012 Rank 43 Aligned Residues 288 % Identity 15% Template c1d7kB_ PDB info PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
Predicted Secondary structure																																																						.																			.
Query SS confidence																																																						.																			.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	.	K	P	V	L	L	L	E	G
Query Conservation																																																						.																			.
Alig confidence																																.					.	.	.	.														.																			.
Template Conservation																																.					.	.	.	.
Template Sequence		D	A	F	Y	V	A	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	R	V	T	P	F	Y	A	.	V	C	N	D	.	.	.	.	S	K	A	I	V	K	T	L	A	A	T	G	T	G	F	D	C	A	S	K	T	E	I	Q	L	V	Q	S	L	G	V	P	P	E	R	I	I	Y	A	N	P
Template Known Secondary structure																								T	T							.					.	.	.	.										T	T	T							S									T	T	T			G	G	G						S
Template Predicted Secondary structure																																.					.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																	.																																	.	.	.	.	.	.	.	.
Query SS confidence																	.																																	.	.	.	.	.	.	.	.
Query Sequence		F	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	.	.	.	.	.	.	.	.	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R
Query Conservation																	.																																	.	.	.	.	.	.	.	.
Alig confidence																	.																				.	.												.	.	.	.	.	.	.	.																					.
Template Conservation																																					.	.																																								.
Template Sequence		C	K	Q	V	S	Q	I	K	Y	A	A	N	N	G	V	Q	M	M	T	F	D	S	E	V	E	L	M	K	V	A	R	A	H	P	K	.	.	A	K	L	V	L	R	I	A	T	D	D	S	K	A	V	C	R	L	S	V	K	F	G	A	T	L	R	T	S	R	L	L	L	E	R	A	K	E	L	.	N	I	D
Template Known Secondary structure		S												T	T								S												T	T	.	.							B				S			S	S			S	S		S	S		B																.	T
Template Predicted Secondary structure																																					.	.																																								.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.																						.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.												.
Template Sequence		.	V	V	G	V	S	F	H	V	G	S	G	.	C	T	D	P	E	T	F	V	Q	A	I	S	D	A	R	C	V	F	D	M	G	A	E	V	G	F	S	M	Y	L	L	D	I	G	G	G	F	P	G	S	E	D	V	K	L	K	F	E	E	I	T	G	V	I	N	P	A	L	D	K	Y	F	P	S	D	S	G
Template Known Secondary structure		.										S		.		S		T																			T	T	T														S	S	S		S	S	S																	S		G	G	G
Template Predicted Secondary structure		.												.
Template SS confidence
			191	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
					207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.	.	.																																																																													.
Query SS confidence		.	.	.																																																																													.
Query Sequence		.	.	.	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	.
Query Conservation		.	.	.																																																																													.
Alig confidence		.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																								.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		V	R	I	I	A	E	P	G	R	Y	Y	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	F	T	L	A	V	N	I	I	A	K	K	I	V	L	K	E	.	.	.	.	.	.	.	.	.	Q	S	S	E	Q	T	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y
Template Known Secondary structure									S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																	.	.	.	.	.	.	.	.	.					S							S			T	T	T	G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.																	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.										300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
			283	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.											.	.	.	.	.	.	.	.												.	.
Query SS confidence		.											.	.	.	.	.	.	.	.												.	.
Query Sequence		.	P	S	G	T	P	V	L	V	N	G	.	.	.	.	.	.	.	.	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation		.											.	.	.	.	.	.	.	.												.	.
Alig confidence		.											.	.	.	.	.	.	.	.												.	.									.
Template Conservation																																										.
Template Sequence		D	H	A	H	V	K	P	L	L	Q	K	R	P	K	P	D	E	R	Y	Y	S	S	S	I	W	G	P	T	C	D	G	L	D	R	I	V	E	R	C	D	.	L	P	E	M	H	V	G	D	W	M	L	F	E	N
Template Known Secondary structure		S										S				T	T											S	S	S		T	T									.						T	T							S
Template Predicted Secondary structure																																										.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions