Job Description P24207 Confidence 3.10% Date Thu Jan 5 11:41:15 GMT 2012 Rank 19 Aligned Residues 237 % Identity 13% Template c2w2eA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 Resolution 1.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50											.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	A	S	T	V	S	E	D	T	A	S	N	Q	E	P	T	L	H	R	G	L	H	N	R	H	I	Q	L	I	A	L	G	G	A	I	G	T	G	L	F	L	G	I	G	P	A	I	Q	.	.	.	.	.	.	.	.	.	.	M	A	G	P	A	V	L	L	G	Y	G	V	A	G	I	I	A	F	L	I	M
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	A	P	Y	I	T	N	A	Y	K	P	A	Y	A	R	W	G	F	G	S	D	S	V	R	N	H	F	I	A	M	S	G	E	F	V	G	T	F	L	F	L	W	S	A	F	V	I	A	Q	I	A	N	Q	A	P	E	T	P	D	G	G	S	N	P	A	Q	L	I	M	I	S	F	G	F	G	F	G	V	M
Template Known Secondary structure		G	G	T					S					G	G	G	G			T	T	T	T	S																														T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.										.	.	.	140	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	L	G	E	M	V	V	E	E	P	V	S	G	S	F	A	H	F	A	Y	K	Y	W	G	P	F	A	G	F	L	S	G	W	N	Y	W	V	M	F	V	L	V	G	M	A	E	L	T	A	A	G	I	Y	M	Q	Y	W	F	P	D	V	P	T	W	.	.	.	.	.	.	.	.	.	I	W	A	A	A	F
Query Conservation																																																																			.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	V	F	I	T	Y	R	V	S	G	G	N	L	N	P	A	V	T	L	A	L	V	L	A	R	A	I	P	P	F	R	G	I	L	M	A	F	T	Q	I	V	A	G	M	A	A	A	G	A	A	S	A	M	T	P	G	E	I	A	F	A	N	A	L	G	G	G	A	S	R	T	R	G	L	F	L	E	A	F
Template Known Secondary structure								T	T	T	T					S										T	T	S	S																											S		S	S				S					T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	I	I	N	A	V	N	L	V	N	V	R	L	Y	G	E	T	E	F	W	F	A	L	I	K	V	L	A	I	I	G	M	I	G	F	G	L	W	L	L	F	S	G	H	G	G	E	K	A	S	I	D	N	L	W	R	Y	G	G	F	F	A	T	G	W	N	G	L	I	L	S	L	A	V	I	M	F	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	A	I	L	C	L	T	V	L	M	L	A	V	E	K	H	R	A	T	W	F	A	P	F	V	I	G	I	A	L	L	I	A	H	L	I	C	I	Y	Y	T	G	A	G	L	N	P	A	R	S	F	G	P	A	V	A	A	R	S	F	P	N	Y	H	W	I	Y	W	L	G	P	I	L	G	A	F	L	A	Y
Template Known Secondary structure														T	T	S		S	T	T	G	G	G																									S												T				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	L	E	L	I	G	I	T	A	A	E	A	R	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	W	Q	M	W	K	W	L	N	Y	Q	T	T	N	P
Template Known Secondary structure										T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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