Job Description P32166 Confidence 92.09% Date Thu Jan 5 11:49:43 GMT 2012 Rank 2 Aligned Residues 200 % Identity 11% Template c3ts7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus Resolution 1.94 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	V	G	T	A	L	A	W	W	Q	G	H	F	D	P	L	V	A	L	L	A	L	I	T	A	G	L	L	Q	I	L	S	N	L	A	N	D	Y	G	D	A	V	K	G	S	D	K	P	D	R	I	G	P	L	R	G	M	Q	K	G	V	I	T	Q	Q	E	M	K	R	A	L	I	I	T	V	V	L	I
Query Conservation
Alig confidence															.	.																												.	.	.	.									.
Template Conservation															.	.																												.	.	.	.									.
Template Sequence		P	L	L	T	Y	A	T	G	Q	T	I	G	V	.	.	A	A	D	L	L	D	G	P	A	C	A	V	E	F	I	H	V	Y	S	L	I	H	D	D	L	P	A	.	.	.	.	M	D	D	D	D	L	R	R	.	G	K	P	T	C	H	K	A	Y	D	E	A	T	A	I	L	A	G	D	G	L	Q	A	L	A
Template Known Secondary structure													T		.	.		G	G	G	T																			T	S	T	T	.	.	.	.	T	T			S	B	S	S	.	S	S	B						S
Template Predicted Secondary structure															.	.																												.	.	.	.									.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		107	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.
Query Sequence		C	L	S	G	L	A	L	V	A	.	.	.	.	.	.	.	.	V	A	C	H	T	L	A	D	F	V	G	F	L	I	L	G	G	L	S	I	I	A	A	I	T	Y	T	V	G	N	R	P	Y	G	Y	I	G	L	G	D	I	S	V	L	V	F	F	G	W	L	S	V	M	G	S	W	Y	L	Q	A	H	T	L
Query Conservation											.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	H	V	L	A	Q	D	P	S	I	A	V	P	A	E	N	R	I	A	M	I	E	T	L	A	K	A	S	G	P	A	G	M	V	G	G	Q	A	I	D	L	A	S	V	G	K	K	L	D	L	P	G	L	E	N	M	H	I	R	K	T	G	A	L	I	R	A	S	V	R	L	A	C	L	A	R	P	G	L	P
Template Known Secondary structure									T	T																				S	T	T	T										T	T	T	T																T														T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	A	L	I	L	P	A	T	A	C	G	L	L	A	T	A	V	L	N	I	N	N	L	R	D	I	N	S	D	R	E	N	G	K	N	T	L	V	V	R	L	G	E	V	N	A	R	R	Y	H	A	C	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	Q	F	D	R	L	D	H	Y	A	K	C	I	G	L	A	F	Q	I	Q	D	D	I	L	D	E	E	S	D	T	Q	T	L	K	P	N	Y	P	A	L	L	G	L	S	G	A	K	E	K	A	E	E	M	H
Template Known Secondary structure																																T	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions