Job Description P32166 Confidence 2.89% Date Thu Jan 5 11:49:43 GMT 2012 Rank 44 Aligned Residues 185 % Identity 12% Template c3rmgB_ PDB info PDB header:transferase Chain: B: PDB Molecule:octaprenyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 bacteroides thetaiotaomicron Resolution 2.30 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	A	W	L	E	S	L	R	P	K	T	L	P	L	A	F	A	A	I	I	V	G	T	A	L	A	W	W	Q	G	H	F	D	P	L	V	A	L	L	A	L	I	T	A	G	L	L	Q	I	L	S	N	L	A	N	D	Y	G	D	A	V	K	G	S	D	K	P	D	R	I	G	P	L	R	G	M	Q	K	G
Query Conservation
Alig confidence																											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	S	V	I	T	H	I	R	K	R	N	M	M	R	P	I	L	V	L	L	V	A	R	L	.	.	.	.	.	Y	G	A	V	T	P	A	T	L	H	A	A	V	S	L	E	L	L	H	T	A	S	L	V	H	D	D	V	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																										T	.	.	.	.	.	T	S																								G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	T	Q	Q	E	M	K	R	A	L	I	I	T	V	V	L	I	C	L	S	G	L	A	L	V	A	V	A	C	H	T	L	A	D	F	V	G	F	L	I	L	G	G	L	S	I	I	A	A	I	T	Y	T	V	G	N	R	P	Y	G	Y	I	G	L	G	D	I	S	V	L	V	F	F	G	W	L	S	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	N	N	K	V	S	V	L	A	G	D	Y	L	L	A	T	S	L	V	H	A	E	Q	T	N	N	Y	E	I	I	R	L	V	S	S	L	G	Q	K	L	A	E	G	E	L	L	Q	L	S	N	V	S	N	H	S	F	S	E	E	V	Y	F	D	V	I	R	K	K	T	A	A	L	F	A	A	C	A	E	A
Template Known Secondary structure																									T	T	T																					T	T	T	T	T	T	T																T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.
Query Sequence		G	S	W	Y	L	Q	A	H	T	L	I	P	A	L	I	L	P	A	T	A	C	G	L	L	A	T	A	V	L	N	I	N	N	L	R	D	I	N	.	.	.	.	.	.	.	.	S	D	R	E	N	G	K	N	T	L	V	V	R	L
Query Conservation																																								.	.	.	.	.	.	.	.
Alig confidence					.	.																																		.	.	.	.	.	.	.	.
Template Conservation					.	.
Template Sequence		A	A	L	.	.	S	V	Q	V	G	E	E	E	V	A	F	A	R	L	L	G	E	Y	I	G	I	C	F	Q	I	K	D	D	I	F	D	Y	F	D	S	K	G	K	P	T	G	N	D	M	L	E	G	K	L	T	L	P	A	L	Y
Template Known Secondary structure					.	.	T	T	T																												T	T	S							T	T	T	T	G	G	G	T
Template Predicted Secondary structure					.	.
Template SS confidence
		183	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions