Job Description P32166 Confidence 94.07% Date Thu Jan 5 11:49:43 GMT 2012 Rank 1 Aligned Residues 207 % Identity 14% Template c3m9uD_ PDB info PDB header:transferase Chain: D: PDB Molecule:farnesyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from lactobacillus brevis atcc 367 Resolution 1.77 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	V	G	T	A	L	A	W	W	Q	G	H	F	D	P	L	V	A	L	L	A	L	I	T	A	G	L	L	Q	I	L	S	N	L	A	N	D	Y	G	D	A	V	K	G	S	D	K	P	D	R	I	G	P	L	R	G	M	Q	K	G	V	I	T	Q	Q	E	M	K	R	A	L	I	I	T	V	V	L	I
Query Conservation
Alig confidence																																												.	.	.	.									.
Template Conservation																																												.	.	.	.									.
Template Sequence		P	L	L	T	V	A	T	M	Q	S	L	G	V	T	F	V	P	E	R	H	W	R	P	V	M	A	L	E	L	L	H	T	Y	S	L	I	H	D	D	L	P	A	.	.	.	.	M	D	N	D	A	L	R	R	.	G	E	P	T	N	H	V	K	F	G	A	G	M	A	T	L	A	G	D	G	L	L	T	L	A
Template Known Secondary structure												T	T																												S	T	T	.	.	.	.	T	T			S			T	.	T
Template Predicted Secondary structure																																												.	.	.	.									.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		C	L	S	G	L	A	L	V	A	.	.	.	.	.	.	V	A	C	H	T	L	A	D	F	V	G	F	L	I	L	G	G	L	S	I	I	A	A	I	T	Y	T	V	G	N	R	P	Y	G	Y	I	G	L	G	D	I	S	V	L	V	F	F	G	W	L	S	V	M	G	S	W	Y	L	Q	A	H	T	L	I	P
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		F	Q	W	L	T	A	T	D	L	P	A	T	M	Q	A	A	L	V	Q	A	L	A	T	A	A	G	P	S	G	M	V	A	G	Q	A	K	D	I	Q	S	E	H	V	N	L	P	L	S	Q	L	R	V	L	H	K	E	K	T	G	A	L	L	H	Y	A	V	Q	A	G	L	I	.	.	L	G	Q	A	P	E	A
Template Known Secondary structure						T	S	S	S																		S	T	T	T											T	T	T																T														.	.		T	T			G	G
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	L	P	A	T	A	C	G	L	L	A	T	A	V	L	N	I	N	N	L	R	D	I	N	S	D	R	E	N	G	K	N	T	L	V	V	R	L	G	E	V	N	A	R	R	Y	H	A	C	L	L	M	G	S	L	V	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	W	P	A	Y	L	Q	F	A	D	A	F	G	L	A	F	Q	I	Y	D	D	I	L	D	V	V	S	S	P	A	E	A	K	N	T	Y	P	G	K	L	G	L	I	G	A	N	Q	A	L	I	D	T	I	H	S	G	Q	A	A	L
Template Known Secondary structure		G																																T	T	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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