Job Description P32166 Confidence 14.67% Date Thu Jan 5 11:49:43 GMT 2012 Rank 22 Aligned Residues 183 % Identity 15% Template c1wmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus Resolution 1.55 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	A	W	W	Q	G	H	F	D	P	L	V	A	L	L	A	L	I	T	A	G	L	L	Q	I	L	S	N	L	A	N	D	Y	G	D	A	V	K	G	S	D	K	P	D	R	I	G	P	L	R	G	M	Q	K	G	V	I	T	Q	Q	E	M	K	R	A	L	I	I	T	V	V	L	I	C	L	S	G	L
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		T	V	Y	S	A	L	A	H	G	A	P	L	E	A	G	L	E	A	A	T	A	L	E	L	F	Q	N	W	V	L	V	H	D	D	I	E	D	G	S	E	E	R	.	.	.	.	.	.	.	R	G	R	P	A	L	H	R	L	H	P	M	P	L	A	L	N	A	G	D	A	M	H	A	E	M	W	G	L	L	A
Template Known Secondary structure									T	T																													T					.	.	.	.	.	.	.	T	T								S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		112	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		A	L	V	.	.	.	.	.	.	.	A	V	A	C	H	T	L	A	D	F	V	G	F	L	I	L	G	G	L	S	I	I	A	A	I	T	Y	T	V	G	N	R	P	Y	G	Y	I	G	L	G	D	I	S	V	L	V	F	F	G	W	L	S	V	M	G	S	W	Y	L	Q	A	H	T	L	I	P	A	L	I	L
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																																																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	G	L	A	R	G	L	F	P	P	E	V	L	L	E	F	H	E	V	V	R	R	T	A	Y	G	Q	H	L	D	L	L	W	T	L	G	G	T	F	D	L	R	P	E	D	Y	F	R	M	V	A	H	K	A	A	Y	Y	T	A	V	A	P	L	R	L	G	A	L	L	A	G	K	T	P	P	A	A	.	.	.
Template Known Secondary structure						T	T	S	S																												S	S	S																T																T	T							.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	T	A	C	G	L	L	A	T	A	V	L	N	I	N	N	L	R	D	I	N	.	.	.	.	.	.	.	.	.	.	S	D	R	E	N	G	K	N	T	L	V	V	R	L	G	E	V	N
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	E	E	G	G	L	R	L	G	T	A	F	Q	I	V	D	D	V	L	N	L	E	G	G	E	A	Y	G	K	E	R	A	G	D	L	Y	E	G	K	R	T	L	I	L	L	R	F	L	E	E
Template Known Secondary structure																							S		S				S	S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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