 |
Job Description | P26616 | Confidence | 95.04% | Date | Thu Jan 5 11:43:01 GMT 2012 |
Rank | 80 | Aligned Residues | 106 |
% Identity | 23% | Template | d1gv0a1 |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| LDH N-terminal domain-like
|
Resolution | 2.5 |
|
 |
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | K | I | V | F | L | G | A | G | S | A | G | C | G | I | A | E | M | I | I | S | Q | T | Q | R | E | G | L | S | E | E | A | A | R | Q | K | V | F | M | V | D | R | F | G | L | L | T | D | K | M | P | N | L | L | P | F | Q | T | K | L | V | Q | K | R | E | N | L | S | D | W | D | T | D | S | D | V | L | S | L | L |
Query Conservation |   |
  |
|
|
|   |   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
Template Sequence |   |
M | K | I | T | V | I | G | A | G | N | V | G | A | T | T | A | F | R | L | A | E | K | Q | L | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
R | E | L | V | L | L | D | V | V | . |
. |
. |
. |
. |
. |
. |
E | G | I | P | Q | G | K | A | L | D | M | Y | E | S | G | P | V | G | L | F | D | T | K | V | T | G | S | N | D | Y |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |
| S | S | . | . | . | . | . | . | . | S | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T |
|
|
|  |  |  |  |  | S |
| G |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
  |
  |   |
376 | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | V | R | N | V | K | P | D | I | L | I | G | V | S | G | Q | T | G | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | T | E | E | I | I | R | E | M | H | K | H | C | P | R | P | I | V | M | P | L | S | N | P |
Query Conservation |   |
|   |
|   |   |
|
|
|
|
|
|
|
|   |
|   |   |   |
|   | . | . | . | . | . | . | . | . | . | . |
|
|   |
|
|
|
|   |
|
|   |   |   |   |
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
| . | . |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
Template Sequence |   |
A | D | T | A | N | S | . |
. |
D | I | V | V | I | T | A | G | L | P | R | K | P | G | M | T | L | S | M | N | A | G | I | V | R | E | V | T | G | R | I | M | E | H | S | K | N | P | I | I | V | V | V | S | N | P |
Template Known Secondary structure |   |
G | G | G |
| S |
| . | . | S |  |  |  |  |
|
| S |
|
|
|
| T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S | S |
|  |  |  |  |
| S | S | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
| . | . |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
65 | . | . | . | . | 70 | |
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|