Job Description P26616 Confidence 100.00% Date Thu Jan 5 11:43:01 GMT 2012 Rank 5 Aligned Residues 442 % Identity 27% Template c3nv9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme; PDBTitle: crystal structure of entamoeba histolytica malic enzyme Resolution 2.25 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	E	V	V	E	T	I	E	E	Q	A	E	R	A	W	I	Q	Y	Q	G	F	K	T	E	I	D	K	H	I	Y	L	R	N	I	Q	D	T	N	E	T	L	F	Y	R	L	V	N	N	H	L	D	E	M	M	P	V	I	Y	T	P	T	V	G	A	A	C	E	R	F	S	E	I	Y	R	R	S	R	G
Query Conservation
Alig confidence																.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	K	A	D	L	S	N	L	E	E	C	L	P	.	.	.	S	T	L	S	Q	E	Q	R	A	V	A	K	T	Q	F	Y	K	E	L	A	E	K	V	H	K	F	Y	K	.	.	.	.	.	.	.	.	.	.	G	K	I	Q	I	M	P	K	C	T	L	A	G	F	N	W	F	N	A	Y	Y	T	P	G	V
Template Known Secondary structure					T	T		T	T					S		.	.	.	T	T																										T	.	.	.	.	.	.	.	.	.	.	S	S							S			S	S	G	G	G					S	T	T	T
Template Predicted Secondary structure																.	.	.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		V	F	I	S	Y	Q	N	R	H	N	M	D	D	I	L	Q	N	V	P	N	H	N	I	K	V	I	V	V	T	D	G	E	R	I	L	G	L	G	D	Q	G	.	I	G	G	M	G	I	P	I	G	K	L	S	L	Y	T	A	C	G	G	I	S	P	A	Y	T	L	P	V	V	L	D	V	G	T	N	N	Q	Q
Query Conservation																																											.
Alig confidence													.																														.																						.	.	.													.	.
Template Conservation													.																																																				.	.	.													.	.
Template Sequence		S	R	I	S	T	N	I	R	D	N	N	.	D	S	S	L	F	Y	S	L	R	G	N	F	V	G	V	V	S	D	S	T	R	V	L	G	D	G	D	V	T	P	P	G	G	L	G	V	M	E	G	K	A	L	L	M	K	Y	L	G	G	I	D	.	.	.	A	V	P	I	C	I	D	S	K	N	K	E	.	.
Template Known Secondary structure												G	.	G	G					S	G	G	G	G								S	S	S	B	G	G	G	B				G	G	G	G																			.	.	.									B		T	T	.	.
Template Predicted Secondary structure													.																																																				.	.	.													.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		L	L	N	D	P	L	Y	M	G	W	R	N	P	R	I	T	D	D	E	Y	Y	E	F	V	D	E	F	I	Q	A	V	K	Q	R	W	P	D	V	L	L	Q	F	E	D	F	A	Q	K	N	A	M	P	L	L	N	R	Y	R	N	E	.	.	I	C	S	F	N	D	D	I	Q	G	T	A	A	V	T	V	G	T
Query Conservation																																																														.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																								.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		G	K	N	D	P	.	.	.	.	.	.	.	.	.	.	.	.	D	A	V	I	E	F	V	Q	R	I	Q	H	T	F	.	.	.	.	.	.	G	A	I	N	L	E	D	I	S	Q	P	N	C	Y	K	I	L	D	V	L	R	E	S	C	D	I	P	V	W	H	D	D	Q	Q	G	T	A	S	V	T	L	A	G
Template Known Secondary structure		S		B			.	.	.	.	.	.	.	.	.	.	.	.											G	G	G		.	.	.	.	.	.	S						S			T	T														S	S					T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.													.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	A	S	R	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F	M	V	D	R	F	G	L	L	T	D	K	M	P	N	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.																																					.	.
Template Conservation																																		.	.	.	.	.	.	.	.																																					.	.
Template Sequence		L	L	N	A	L	K	L	V	K	K	D	I	H	E	C	R	M	V	F	I	G	A	G	S	S	N	T	T	C	L	R	L	.	.	.	.	.	.	.	.	I	V	T	A	G	A	D	P	K	K	I	V	M	F	D	S	K	G	S	L	H	N	G	R	E	D	I	K	K	D	T	R	F	Y	R	K	.	.	W	E
Template Known Secondary structure										T			G	G	G									S										.	.	.	.	.	.	.	.				T	T			G	G	G						T	T					T	T								G	G	G				.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.									.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	.	Q	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R	P	I	V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V
Query Conservation																																.
Alig confidence																				.	.											.														.	.	.															.	.								.	.
Template Conservation																				.	.																									.	.	.															.	.								.	.
Template Sequence		I	C	E	T	T	N	P	S	K	F	G	S	I	A	E	A	C	V	.	.	G	A	D	V	L	I	S	L	S	T	P	G	P	G	V	V	K	A	E	W	I	K	S	M	.	.	.	G	E	K	P	I	V	F	C	C	A	N	P	V	P	.	.	E	I	Y	P	Y	E	A	.	.	K	E	A	G	A	Y	I	V
Template Known Secondary structure						S		T	T				S						T	.	.	T		S								S	S											T	S	.	.	.		S	S								S	S	S		.	.	S	S						.	.			T	T		S
Template Predicted Secondary structure																				.	.																									.	.	.															.	.								.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.			.	340	.	.	.	.	.	.
		441	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		A	T	G	.	S	P	F	N	P	V	V	W	K	D	K	I	Y	P	I	A	Q	C	N	N	A	F	I	F	P	G	I	G	L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M	S	A	S	E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L	P	E	L	K	D	I	Q	K	V	S
Query Conservation					.
Alig confidence					.				.	.	.	.	.	.	.	.	.	.	.																																																												.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.																																																												.
Template Sequence		A	T	G	R	G	D	F	.	.	.	.	.	.	.	.	.	.	.	P	N	Q	V	N	N	S	V	G	F	P	G	I	L	K	G	A	L	I	V	R	A	R	K	I	T	D	N	M	A	I	A	A	S	R	A	L	A	E	F	A	E	K	R	G	I	N	P	D	N	I	I	G	T	M	D	E	P	G	.	I	F
Template Known Secondary structure				S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	S	S	B			G	G	G	T											T	T		S	S																				T			B	T	T	B		S			T	T		T	T	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																																																												.
Template SS confidence
		347	.	.	350	.	.	.												.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.			.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		R	A	I	A	F	A	V	G	K	M	A	Q	Q	Q	G	V	A	V	.	.	K	T	S	A	E	A	L	Q	Q	A	I	D	D	N	F	W	Q
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		P	K	E	A	A	D	V	A	M	Q	A	I	K	D	G	V	A	R	V	T	D	L	T	W	Q	Q	V	Y	D	I	A	E	H	D	I	K	E
Template Known Secondary structure																T			S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.