Job Description P26616 Confidence 84.15% Date Thu Jan 5 11:43:01 GMT 2012 Rank 213 Aligned Residues 211 % Identity 20% Template c3k5pA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis Resolution 2.15 Å

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		257	.	.	260	.	.	.		.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure									.								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	R	Y	R	N	E	.	I	C	S	F	N	D	D	.	.	.	I	Q	G	T	A	A	V	T	V	G	T	L	I	A	A	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I
Query Conservation									.								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	A	A	R	K	R	G	I	P	V	F	N	A	P	F	S	N	T	R	S	V	A	E	L	V	I	G	E	I	I	M	L	M	R	R	I	F	P	R	S	V	S	A	H	A	G	G	W	E	K	T	A	I	G	S	R	E	V	R	G	K	T	L	G	I	V	G	Y	G	N	I	G	S	Q	V	G	N	L	A
Template Known Secondary structure								T	T							S	S	T	T																	T	T										T	T							T	T				S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F	M	V	D	R	F	G	L	L	T	D	K	M	P	N	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N	L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	Q	T	G
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.		.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.		.
Template Sequence		E	S	L	G	M	T	.	.	.	.	.	.	.	.	.	.	.	V	R	Y	Y	D	T	S	D	K	L	Q	Y	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	P	A	A	S	L	D	E	L	L	K	T	S	.	.	D	.	V	V	S	L	H	V	P	S	K
Template Known Secondary structure				T	T			.	.	.	.	.	.	.	.	.	.	.						T	T					B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B				S	S									.	.	S	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.		.
Template SS confidence
		172	.	.	.	.	.												.	.	180	.	.	.	.	.	.	.	.	.	190	.																							.	.	.	.	.	.	.	.	200	.	.	.	.	.			.		.	.	.	210	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.			.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																							.	.												.
Query SS confidence																																																							.	.												.
Query Sequence		L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R	P	I	V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V	A	T	G	S	P	F	N	.	.	P	V	V	W	K	D	K	I	Y	P	I	.	A	Q	C	N	N	A	F	I	F	P	G	I	G
Query Conservation																																																							.	.												.
Alig confidence																.	.	.																							.	.													.	.												.
Template Conservation																.	.	.																							.	.
Template Sequence		L	I	T	E	A	K	L	R	K	M	K	K	G	A	.	.	.	F	L	I	N	N	A	R	G	S	D	V	D	L	E	A	L	A	K	V	L	Q	E	.	.	G	H	L	A	G	A	A	I	D	V	F	P	V	E	P	A	S	N	G	E	R	F	S	T	P	L	Q	G	L	E	N	V	I	L	T	P	H	I	G
Template Known Secondary structure			B								S		T	T		.	.	.						S		T	T	S	B											T	.	.	T	S										S	S			S	S	T	T	S					T	T	T	T		T	T						S		T
Template Predicted Secondary structure																.	.	.																							.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M	S	A	S	E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L	P	E	L	K
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		G	S	T	E	E	A	Q	.	.	.	.	.	E	R	I	G	T	E	V	T	R	K	L	V	E	Y	S	D	V	G	S	T	V	G	A	V	N	F	P	Q	V	Q
Template Known Secondary structure		T							.	.	.	.	.																					T	T	B	S	S	S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions