Job Description P26616 Confidence 96.56% Date Thu Jan 5 11:43:01 GMT 2012 Rank 38 Aligned Residues 313 % Identity 17% Template c3d64A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei Resolution 2.30 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.											.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		V	V	L	D	V	G	T	N	N	Q	Q	L	L	N	D	P	L	Y	M	G	W	R	N	P	R	I	T	D	D	E	Y	Y	E	F	V	D	E	F	I	Q	A	V	K	Q	R	W	.	.	.	.	.	.	.	.	.	.	P	D	V	L	L	Q	F	E	D	F	A	Q	K	.	.	N	A	M	P	L	L	N	R	Y
Query Conservation																																																.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		M	I	L	D	D	G	G	D	A	T	L	L	L	I	L	G	S	K	A	E	K	D	R	S	V	I	A	R	P	T	N	E	E	E	V	A	L	F	K	S	I	E	R	H	L	E	I	D	G	S	W	Y	S	K	R	L	A	H	I	K	G	V	T	E	E	T	T	T	G	V	H	R	L	Y	Q	M	E	K	D	G
Template Known Secondary structure						S	S	S																G	G	G	G	T				S															T	T		T	T	T	T					T	T								S													T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		261	.	.	.	.	.	.	.											.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	E	I	C	S	F	N	.	.	.	.	.	.	.	.	.	.	D	D	I	Q	G	T	A	A	V	T	V	G	T	L	I	A	A	S	R	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q
Query Conservation										.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	P	F	P	A	F	N	V	N	D	S	V	T	K	S	K	F	D	N	L	Y	G	C	R	E	S	L	V	D	G	I	K	.	.	.	R	A	T	D	V	M	I	A	G	K	I	A	V	V	A	G	Y	G	D	V	G	K	G	C	A	Q	S	L	R	G	L	G	A	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S						T	T	S														T	T							.	.	.								T	T									S												T	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	F	M	V	D	R	F	G	L	L	T	D	K	M	P	N	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N	L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	Q	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R
Query Conservation
Alig confidence		.							.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.																.	.																										.	.
Template Conservation		.							.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.																.	.																										.	.
Template Sequence		.	V	W	V	T	E	I	.	.	.	.	.	.	.	.	.	.	.	D	P	I	C	A	L	Q	A	A	M	.	.	.	.	.	.	.	.	E	G	Y	R	V	V	T	M	E	Y	A	A	D	K	A	.	.	D	I	F	V	T	A	T	G	N	Y	H	V	I	N	H	D	H	M	K	A	M	R	H	N	A	.	.
Template Known Secondary structure		.						S	.	.	.	.	.	.	.	.	.	.	.										T	.	.	.	.	.	.	.	.	T	T										T	T	T		.	.	S						S	S	S	S		S	B										T	T		.	.
Template Predicted Secondary structure		.							.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.																.	.																										.	.
Template SS confidence
			282	.	.	.	.	.												.	.	290	.	.	.	.	.	.	.									.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.			.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		P	I	V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V	A	T	G	S	P	F	N	P	V	V	W	K	D	K	I	Y	P	I	.	.	A	Q	C	N	N	A	F	I	F	P	G	I	G	L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M
Query Conservation																																																		.	.
Alig confidence		.											.	.					.	.	.	.																												.	.							.	.	.	.	.	.
Template Conservation		.											.	.					.	.	.	.																																				.	.	.	.	.	.
Template Sequence		.	I	V	C	N	I	G	H	F	D	S	.	.	E	I	D	V	.	.	.	.	A	S	T	R	Q	Y	Q	W	E	N	I	K	P	Q	V	D	H	I	I	F	P	D	G	K	R	V	I	L	L	A	E	G	R	L	V	.	.	.	.	.	.	N	L	G	C	A	T	G	H	P	S	F	V	M	S	N	S	F	T
Template Known Secondary structure		.						S	S	S	S		.	.	S	B			.	.	.	.	G	G	G	T	T	S							T	T							T	T	S							G	G	G	S	B		.	.	.	.	.	.				T	S			S
Template Predicted Secondary structure		.											.	.					.	.	.	.																																				.	.	.	.	.	.
Template SS confidence
			338	.	340	.	.	.	.	.	.	.			.	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.							.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		S	A	S	E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L	P	E	L	K	D	I	Q	K	V	S	R	A	I	A	F	A	V	G	K	.	M	A	Q	Q	Q	G	V	A	V	K	T	S	A	E	A	L	Q	Q	A	I	D	D	N	F	W	Q	A	E	Y	R	D	Y	R	R
Query Conservation																																										.
Alig confidence																								.	.	.	.	.	.	.												.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		N	Q	T	L	A	Q	I	E	L	F	T	R	G	G	E	Y	A	N	K	V	Y	V	.	.	.	.	.	.	.	L	P	K	H	L	D	E	K	V	A	R	L	H	L	A	R	I	G	A	Q	L	S	E	L	S	D	D	Q	A	A	Y	I	G	V	S	K	A	G	P	F	K	P	D	H	Y	R
Template Known Secondary structure														G	G	G	S		S	S				.	.	.	.	.	.	.															T	T	T	T															T			T	T	S			S		T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.								.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions