Return to main results Retrieve Phyre Job Id

Job DescriptionP26616
Confidence66.96%DateThu Jan 5 11:43:01 GMT 2012
Rank383Aligned Residues160
% Identity14%Templatec3aerB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   223......230.........240.........250.........260.. .......270.........280.........290........
Predicted Secondary structure 










....














Query SS confidence 







































. . . .



































Query Sequence  YYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRN. . . . EICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKI
Query Conservation 
  





 

   

  


 


   


 

 


 .... 
  










 




 
 
  
  
 
 

Alig confidence 







































....










........
















Template Conservation          
  
    


     
 
   
   
  

   
            ........           
 

 
Template Sequence  YPETGESAARHLERACKQPFTKIVPIGVGATRDFLAEVSKITGLPVVTDESTLRQ. . . . . . . . PWWSASVDSTYLTGKRV
Template Known Secondary structure 



B





S







TT

........SGGGGGGTT
Template Predicted Secondary structure 












........


Template SS confidence 















































































   212.......220.........230.........240.........250.........260...... ...270.........280...
 
   299300.........310..... ....320.........330.........340.........350.........360...... ...370......
Predicted Secondary structure 


.





















.






Query SS confidence 
















.


















































.









Query Sequence  VFLGAGSAGCGIAEMII. SQTQREGLSEEAARQKVFMVDRFGLLTDKMPNLLPFQTKLVQKRENLSDWD. TDSDVLSLLD
Query Conservation 
  





 


  
 .      


 


   
  

  


   
  
      

          .       
 
Alig confidence 
















.




....................

























.









Template Conservation   
         
   
  


  ....................

                            
  

  
Template Sequence  FIFGDGTHVIAAARIAAKEVGFE. . . . . . . . . . . . . . . . . . . . VVGMGCYNREMARPLRTAAAEYGLEALITDDYLEVEK
Template Known Secondary structure 
SSTT

....................S
GGGTTT



S
Template Predicted Secondary structure 





....................










Template SS confidence 















































































   284.....290.........300...... ...310.........320.........330.........340...
 
   377..380.........390.........400.........410.........420
Predicted Secondary structure 





















Query SS confidence 











































Query Sequence  VVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPT
Query Conservation   
  







 
   
 

 



 

    










Alig confidence 













.........












.






Template Conservation   
    





  .........     
   


 .     

Template Sequence  AIEAAAPELILGTQ. . . . . . . . . MERNIAKKLGLPC. AVISAPV
Template Known Secondary structure 

S
.........TT

.
S
S
Template Predicted Secondary structure 




.........



.


Template SS confidence 











































   344.....350....... ..360.........370 .......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions