Job Description P26616 Confidence 80.58% Date Thu Jan 5 11:43:01 GMT 2012 Rank 232 Aligned Residues 235 % Identity 10% Template c2nacA_ PDB info PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase Resolution 1.80 Å

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		232	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure											.																																						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	V	K	Q	R	W	P	D	.	V	L	L	Q	F	E	D	F	A	Q	K	N	A	M	P	L	L	N	R	Y	R	N	E	I	C	S	F	N	D	D	I	Q	G	T	A	A	V	.	.	.	T	V	G	T	L	I	A	A	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.													.																									.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		P	E	R	I	A	K	A	K	N	L	K	L	A	L	T	A	G	I	G	S	D	H	.	V	D	L	Q	S	A	I	D	R	N	V	T	V	A	E	V	T	Y	C	N	S	I	S	V	A	E	H	V	V	M	M	I	L	S	L	V	R	N	Y	L	P	S	H	E	W	A	R	K	G	G	W	N	I	A	D	C	V
Template Known Secondary structure									T	T							S	S	S			T	T	.	B								T	T							T	T	T	T																	T	T										T	T
Template Predicted Secondary structure																								.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F	M	V	D	R	F	G	L	L	T	D	K	M	P	N	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N	L	S	D	W	D	T
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		S	H	A	Y	D	L	E	A	M	H	V	G	T	V	A	A	G	R	I	G	L	A	V	L	R	R	L	A	P	F	D	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	Y	T	D	R	H	R	L	P	E	S	V	E	K	E	L	N	L	T	W	H	.	.	.	.	.	.
Template Known Secondary structure		T	T					T	T									S											G	G	G	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S											T					.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.					.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	.	.	.	.	V	S	G	Q	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R	P	I	V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V	A	T	G
Query Conservation																							.	.	.	.
Alig confidence		.	.	.	.											.	.						.	.	.	.																					.	.	.											.	.	.
Template Conservation		.	.	.	.											.	.																														.	.	.											.	.	.
Template Sequence		.	.	.	.	A	T	R	E	D	M	Y	P	V	C	.	.	D	V	V	T	L	N	C	P	L	H	P	E	T	E	H	M	I	N	D	E	T	L	K	L	F	K	R	G	A	.	.	.	Y	I	V	N	T	A	R	G	K	L	.	.	.	C	D	R	D	A	V	A	R	A	L	E	S	G	R	L	A	G	Y	A
Template Known Secondary structure		.	.	.	.	S	S					G	G	G		.	.	S						S				T	T	T	T	T		B	S					T	T	S		T	T		.	.	.						S		G	G	G	.	.	.	B											T	T	S
Template Predicted Secondary structure		.	.	.	.											.	.																														.	.	.											.	.	.
Template SS confidence
						239	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	F	N	P	V	V	W	K	D	K	I	Y	P	I	A	Q	C	N	N	A	F	I	F	P	G	I	G	L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M	S	A	S	E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L
Query Conservation
Alig confidence																														.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		G	D	V	W	F	P	Q	P	A	P	K	D	H	P	W	R	T	M	P	Y	N	G	M	T	P	H	I	S	.	.	.	.	.	G	T	T	L	T	A	Q	A	R	Y	A	A	G	T	R	E	I	L	E	C	F	F	E	G	R	P	I	R	D	E	Y	L	I
Template Known Secondary structure			S			S	S	S	S			T	T		G	G	G	T	S	T	T	B					S		T	.	.	.	.	.	T		S																					T					G	G	G
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions