Job Description P26616 Confidence 100.00% Date Thu Jan 5 11:43:01 GMT 2012 Rank 6 Aligned Residues 386 % Identity 30% Template c1ww8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate oxidoreductase; PDBTitle: crystal structure of malic enzyme from pyrococcus2 horikoshii ot3 Resolution 2.50 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		E	M	M	P	V	I	Y	T	P	T	V	G	A	A	C	E	R	F	S	E	I	Y	R	R	S	R	G	V	F	I	S	Y	Q	N	R	H	N	M	D	D	I	L	Q	N	V	P	N	H	N	I	K	V	I	V	V	T	D	G	E	R	I	L	G	L	G	D	Q	G	.	I	G	G	M	G	I	P	I	G	K	L
Query Conservation																																																																						.
Alig confidence																					.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																					.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	T	L	A	Y	T	P	G	V	A	E	P	C	K	E	I	A	.	.	.	.	R	D	P	G	K	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	T	S	K	G	N	L	V	A	V	V	S	D	G	S	R	I	L	G	L	G	N	I	G	P	L	A	G	L	P	V	X	E	G	K	A
Template Known Secondary structure								S	T	T	T	T									.	.	.	.			G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	G	G	G								S	S	S	B	T	T	T	B	S						T
Template Predicted Secondary structure																					.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Y	T	A	C	G	G	I	S	P	A	Y	T	L	P	V	V	L	D	V	G	T	N	N	Q	Q	L	L	N	D	P	L	Y	M	G	W	R	N	P	R	I	T	D	D	E	Y	Y	E	F	V	D	E	F	I	Q	A	V	K	Q	R	W	P	D	V	L	L	Q	F	E	D	F	A	Q	K	N	A	M	P	L
Query Conservation
Alig confidence													.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.												.	.
Template Conservation													.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.												.	.
Template Sequence		L	L	F	K	R	F	G	G	V	D	A	.	.	.	F	P	I	X	I	K	E	Q	E	P	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	D	.	I	V	K	A	I	A	P	T	F	G	G	.	.	I	N	L	E	D	I	A	S	P	K	C	F	Y	I
Template Known Secondary structure													.	.	.						S			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.						G	G	G		S		.	.					S			T	T
Template Predicted Secondary structure													.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.												.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.																								.	.	120		.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.
		257	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		L	N	R	Y	R	N	E	I	.	.	C	S	F	N	D	D	I	Q	G	T	A	A	V	T	V	G	T	L	I	A	A	S	R	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F	M
Query Conservation										.	.
Alig confidence										.	.																																																						.	.	.	.									.
Template Conservation																																																																	.	.	.	.									.
Template Sequence		L	E	R	L	R	E	E	L	D	I	P	V	F	H	D	D	Q	Q	G	T	A	A	V	V	L	A	G	L	L	N	A	L	K	V	V	G	K	K	I	S	E	I	T	L	A	L	F	G	A	G	A	A	G	F	A	T	L	R	I	L	T	E	A	.	.	.	.	G	V	K	P	E	N	V	R	.	V	V	E	L
Template Known Secondary structure										S	S																									T	T			T	T	T									S														.	.	.	.	T			G	G	G			.
Template Predicted Secondary structure																																																																	.	.	.	.									.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.		.	.	.	220
		335	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure															.	.	.																																														.
Query SS confidence															.	.	.																																														.
Query Sequence		V	D	R	F	G	L	L	T	D	K	M	P	N	.	.	.	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N	L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	Q	.	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R
Query Conservation															.	.	.																																														.
Alig confidence															.	.	.												.	.	.	.	.	.																.	.												.														.	.	.
Template Conservation																													.	.	.	.	.	.																.	.																										.	.	.
Template Sequence		V	N	G	K	P	R	I	L	T	S	D	L	D	L	E	K	L	F	P	Y	R	G	W	L	L	K	K	.	.	.	.	.	.	T	N	G	E	N	I	E	G	G	P	Q	E	A	L	K	.	.	D	A	D	V	L	I	S	F	T	R	P	G	P	G	V	I	K	P	Q	W	I	E	K	X	N	.	.	.	E	D
Template Known Secondary structure			T	T							T	T	S						S	T	T						T	T	.	.	.	.	.	.			T	T				S	S						T	.	.	T		S									S	T	T	S	S						T	T	S		.	.	.	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.																.	.																										.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V	A	T	G	S	P	F	N	P	V	V	W	K	D	K	I	Y	P	I	A	Q	C	N	N	A	F	I	F	P	G	I	G	L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M	S	A
Query Conservation
Alig confidence													.	.								.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.								.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	V	F	P	L	A	N	P	V	P	.	.	E	I	L	P	E	E	A	.	.	K	K	A	G	A	R	I	V	A	T	G	R	S	D	Y	P	.	.	.	.	.	.	.	.	.	.	N	Q	I	N	N	L	L	G	F	P	G	I	F	R	G	A	L	D	V	R	A	R	T	I	T	D	S	X	I	I	A	A
Template Known Secondary structure									S	S	S		.	.	S	S						.	.			T	T						B	S		T	T	S	S	.	.	.	.	.	.	.	.	.	.	S	B			G	G	G	T											T	T		S
Template Predicted Secondary structure													.	.								.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.											.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.			.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure																																																	.																.	.
Query SS confidence																																																	.																.	.
Query Sequence		S	E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L	P	E	L	K	D	I	Q	K	V	S	R	A	I	A	F	A	V	G	K	M	A	Q	Q	Q	G	V	A	V	.	K	T	S	A	E	A	L	Q	Q	A	I	D	D	N	F	.	.	W	Q	A	E	Y	R	D	Y	R	R
Query Conservation																																																	.																.	.
Alig confidence										.	.															.																							.																.	.
Template Conservation										.	.															.
Template Sequence		A	K	A	I	A	S	I	V	.	.	E	E	P	S	E	E	N	I	I	P	S	P	L	N	.	P	I	V	Y	A	R	E	A	R	A	V	A	E	E	A	X	K	E	G	V	A	R	T	K	V	K	G	E	W	V	E	E	H	T	I	R	L	I	E	F	Y	E	N	V	I	A	P	I	N	K
Template Known Secondary structure								T		.	.	S	S		B	T	T	B	S	S			T	T		.																			T			S	S																						T	T	T
Template Predicted Secondary structure										.	.															.
Template SS confidence
		356	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.