Job Description P26616 Confidence 100.00% Date Thu Jan 5 11:43:01 GMT 2012 Rank 3 Aligned Residues 543 % Identity 40% Template c1qr6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme Resolution 2.10 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	G	P	V	L	L	E	F	P	L	L	N	K	G	S	A	F	S	M	E	E	R	R	N	F	N	L	L	G	L	L	P	E	V	V	E	T	I	E	E	Q	A	E	R	A	W	I	Q	Y	Q	G	F	K	T	E	I	D	K	H	I	Y	L	R	N	I	Q	D	T	N	E	T	L	F	Y	R	L	V	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	G	K	P	L	X	L	N	P	R	T	N	K	G	X	A	F	T	L	Q	E	R	Q	X	L	G	L	Q	G	L	L	P	P	K	I	E	T	Q	D	I	Q	A	L	R	F	H	R	N	L	K	K	X	T	S	P	L	E	K	Y	I	Y	I	X	G	I	Q	E	R	N	E	K	L	F	Y	R	I	L	Q	D
Template Known Secondary structure				S					S		T	T	T			G	G	G	S									T		T	T	T	S		S																		T			S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	D	E	M	M	P	V	I	Y	T	P	T	V	G	A	A	C	E	R	F	S	E	I	Y	R	R	S	R	G	V	F	I	S	Y	Q	N	R	H	N	M	D	D	I	L	Q	N	V	P	N	H	N	I	K	V	I	V	V	T	D	G	E	R	I	L	G	L	G	D	Q	G	I	G	G	M	G	I	P	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	E	S	L	X	P	I	V	Y	T	P	T	V	G	L	A	C	S	Q	Y	G	H	I	F	R	R	P	K	G	L	F	I	S	I	S	D	R	G	H	V	R	S	I	V	D	N	W	P	E	N	H	V	K	A	V	V	V	T	D	G	E	R	I	L	G	L	G	D	L	G	V	Y	G	X	G	I	P	V	G
Template Known Secondary structure		T									S	T	T									T	T	T	S			S			S					G	G	G	T	T								T		S		S	S									S	S		B	T	T	T	B			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		K	L	S	L	Y	T	A	C	G	G	I	S	P	A	Y	T	L	P	V	V	L	D	V	G	T	N	N	Q	Q	L	L	N	D	P	L	Y	M	G	W	R	N	P	R	I	T	D	D	E	Y	Y	E	F	V	D	E	F	I	Q	A	V	K	Q	R	W	P	.	D	V	L	L	Q	F	E	D	F	A	Q	K	N	A
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		K	L	C	L	Y	T	A	C	A	G	I	R	P	D	R	C	L	P	V	C	I	D	V	G	T	D	N	I	A	L	L	K	D	P	F	Y	X	G	L	Y	Q	K	R	D	R	T	Q	Q	Y	D	D	L	I	D	E	F	X	K	A	I	T	D	R	Y	G	R	N	T	L	I	Q	F	E	D	F	G	N	H	N	A
Template Known Secondary structure														G	G	G								S											T	T			S		S	S					S																				T	T							S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	L	L	N	R	Y	R	N	E	I	C	S	F	N	D	D	I	Q	G	T	A	A	V	T	V	G	T	L	I	A	A	S	R	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	F	L	R	K	Y	R	E	K	Y	C	T	F	N	D	D	I	Q	G	T	A	A	V	A	L	A	G	L	L	A	A	Q	K	V	I	S	K	P	I	S	E	H	K	I	L	F	L	G	A	G	E	A	A	L	G	I	A	N	L	I	V	X	S	X	V	E	N	G	L	S	E	Q	E	A	Q	K	K	I	W
Template Known Secondary structure									T	T	T	S	S				T	T	T															T	T	T			S		G	G	G									S																T	T	T									T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		M	V	D	R	F	G	L	L	T	D	K	M	P	N	.	L	L	P	F	Q	T	K	L	V	Q	K	R	E	N	L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	Q	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R	P	I
Query Conservation																.
Alig confidence																.												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		X	F	D	K	Y	G	L	L	V	K	G	R	K	A	K	I	D	S	Y	Q	E	P	F	T	H	S	.	.	.	.	.	.	.	A	P	E	S	I	P	D	T	F	E	D	A	V	N	I	L	K	P	S	T	I	I	G	V	A	G	A	G	R	L	F	T	P	D	V	I	R	A	X	A	S	I	N	E	R	P	V
Template Known Secondary structure					T	T				B	T	T		S	S				T	T	T	G	G	G		B		.	.	.	.	.	.	.			S	S			S	S											S						S		S	S			S													S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.								.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	M	P	L	S	N	P	T	S	R	V	E	A	T	P	Q	D	I	I	A	W	T	E	G	N	A	L	V	A	T	G	S	P	F	N	P	V	V	W	.	K	D	K	I	Y	P	I	A	Q	C	N	N	A	F	I	F	P	G	I	G	L	G	V	I	A	S	G	A	S	R	I	T	D	E	M	L	M	S	A	S
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		I	F	A	L	S	N	P	T	A	Q	A	E	C	T	A	E	E	A	Y	T	L	T	E	G	R	C	L	F	A	S	G	S	P	F	G	P	V	K	L	T	D	G	R	V	F	T	P	G	Q	G	N	N	V	Y	I	F	P	G	V	A	L	A	V	I	L	C	N	T	R	H	I	S	D	S	V	F	L	E	A	A
Template Known Secondary structure							S	S	G	G	G	S	S	S								T	T	T	S		S					S	S								T	T											G	G	G	T											T	T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		E	T	L	A	Q	Y	S	P	L	V	L	N	G	E	G	M	V	L	P	E	L	K	D	I	Q	K	V	S	R	A	I	A	F	A	V	G	K	M	A	Q	Q	Q	G	V	A	V	.	K	T	S	A	E	A	L	Q	Q	A	I	D	D	N	F	W	Q	A	E	Y	R	D	Y	R	R	T	S
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		K	A	L	T	S	Q	L	T	D	E	E	L	A	Q	G	R	L	Y	P	P	L	A	N	I	Q	E	V	S	I	N	I	A	I	K	V	T	E	Y	L	Y	A	N	K	X	A	F	R	Y	P	E	P	E	D	K	A	K	Y	V	K	E	R	T	W	R	S	E	Y	D	S	L	L	P	D	V
Template Known Secondary structure						T	T								T	T		S	S			G	G	G																			T	T						S			S								T	T					S
Template Predicted Secondary structure
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.