Job Description P26616 Confidence 96.38% Date Thu Jan 5 11:43:01 GMT 2012 Rank 42 Aligned Residues 187 % Identity 19% Template c1bvuF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis Resolution 2.50 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.			.	.	.	.	.																.	.	270	.	.	.	.	.
Predicted Secondary structure																									.																		.	.								.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																		.	.								.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	I	T	D	D	E	Y	Y	E	F	V	D	E	F	I	Q	A	V	K	Q	R	W	.	P	D	V	L	L	Q	F	E	D	F	A	Q	K	N	A	M	P	.	.	L	L	N	R	Y	R	N	.	.	E	I	C	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	D	I	Q	G	T	A
Query Conservation																									.																		.	.								.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																		.	.								.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	M	S	D	R	E	K	E	R	L	A	R	G	Y	V	R	A	I	Y	D	V	I	S	P	Y	T	D	I	P	A	P	D	V	Y	T	N	P	Q	I	M	A	W	M	M	D	E	Y	E	T	I	S	R	R	K	D	P	S	F	G	V	I	T	G	K	P	P	S	V	G	G	I	V	A	R	M	D	A	T	A
Template Known Secondary structure		G	G																	S	G	G	G		B	T	T	T					B		T	T																		T	T	S	S		G	G	G	S			S			G	G	G	T			S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	V	G	T	L	I	A	A	S	R	A	A	G	G	Q	L	S	E	K	K	I	V	F	L	G	A	G	S	A	G	C	G	I	A	E	M	I	I	S	Q	T	Q	R	E	G	L	S	E	E	A	A	R	Q	K	V	F	M	V	D	R	F	G	L	L	T	D	K	M	P	N	L	L	P	F	Q	T	K	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.
Template Sequence		R	G	A	S	Y	T	V	R	E	A	A	K	A	L	G	M	D	L	K	G	K	T	I	A	I	Q	G	Y	G	N	A	G	Y	Y	M	A	K	I	M	S	E	.	.	.	.	.	.	.	.	.	E	Y	G	M	K	V	V	A	V	S	D	T	K	G	G	I	Y	N	P	D	G	L	N	A	D	E	V	L	A	W
Template Known Secondary structure															T	T				T	T									S													.	.	.	.	.	.	.	.	.	T	T										T	T						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	K	R	E	N	L	S	D	W	D	T	D	S	D	V	L	S	L	L	D	V	V	R	N	V	K	P	D	I	L	I	G	V	S	G	Q	T	G	L	F	T	E	E	I	I	R	E	M	H	K	H	C	P	R	P	I	V	M	P	L	S	N
Query Conservation
Alig confidence																				.	.																	.													.	.	.	.
Template Conservation																				.	.																	.													.	.	.	.
Template Sequence		K	K	K	T	G	S	V	K	D	F	P	G	A	T	N	I	T	N	.	.	E	E	L	L	E	L	E	V	D	V	L	A	P	S	A	I	.	E	E	V	I	T	K	K	N	A	D	N	I	.	.	.	.	K	A	K	I	V	A	E	L	A	N
Template Known Secondary structure						S	S	S	T	T		T	T	S						.	.					T	S			S						S		.	S	S		B						T	T		.	.	.	.			S						S	S
Template Predicted Secondary structure																				.	.																	.													.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions