Return to main results Retrieve Phyre Job Id

Job DescriptionP45475
Confidence84.27%DateThu Jan 5 12:02:49 GMT 2012
Rank169Aligned Residues104
% Identity14%Templated1bwva1
SCOP infoTIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60 .........70. ........80......
Predicted Secondary structure 





















....





.


Query SS confidence 
















































. . . .










.














Query Sequence  WPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGS. . . . GKQIVLSTLAL. VQASSELGELKRYVE
Query Conservation 

      


  
   






      
  
   
  
     
  ....



 
    
.
    
   
  
 
Alig confidence 




















.


























....










.














Template Conservation 

 
  
 
 

 
 



 
.


 
  

  
 
 

 
  


 

  


   


 


      
 


  
 
Template Sequence  LSGKNYGRVVYEALKGGLDFV. DDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKE
Template Known Secondary structure 

T
SB
.

TT
SSBTTB
TS

B




SS
Template Predicted Secondary structure 





.


















Template SS confidence 















































































   180.........190.........200 .........210.........220.........230.........240.........250........
 
   87..90....... ..100..... ....110.......
Predicted Secondary structure 





........





Query SS confidence 










. . . .







. . . .











Query Sequence  NGEFLIEASDL. . . . GVVNMCAE. . . . RKLPFVAGHALN
Query Conservation   
 
 


 
 ....
       ....   
 
     
Alig confidence 








.
....







....











Template Conservation   

   

 .   
  

  
        





 
  
Template Sequence  LGSVIIMID. LVIGYTAIQTMAKWARDNDMILHLHRAGN
Template Known Secondary structure  TT
S.GGG
TT

TTT
Template Predicted Secondary structure 




.









Template SS confidence 






































   260........ .270.........280.........290.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions