 |
Job Description | P45475 | Confidence | 84.27% | Date | Thu Jan 5 12:02:49 GMT 2012 |
Rank | 169 | Aligned Residues | 104 |
% Identity | 14% | Template | d1bwva1 |
SCOP info | TIM beta/alpha-barrel
| RuBisCo, C-terminal domain
| RuBisCo, large subunit, C-terminal domain
|
Resolution | 2.40 |
|
 |
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | |
. | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | P | K | E | T | L | E | E | F | Y | Q | Q | A | A | T | S | S | A | D | V | I | Y | L | G | E | A | V | C | S | K | R | R | A | T | K | V | G | D | W | L | E | M | A | K | S | L | A | G | S | . |
. |
. |
. |
G | K | Q | I | V | L | S | T | L | A | L | . |
V | Q | A | S | S | E | L | G | E | L | K | R | Y | V | E |
Query Conservation |   |
|
|   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |   | . | . | . | . |
|
|
|
|   |
|   |   |   |   |
| . |
|   |   |   |   |
|   |   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |
|   |
|   |
|
|   |
|   |
|
|
|
|   |
| . |
|
|
|   |
|   |   |
|
|   |   |
|   |
|   |
|
|   |
|   |   |
|
|
|   |
|
|   |   |
|
|
|   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |
|
Template Sequence |   |
L | S | G | K | N | Y | G | R | V | V | Y | E | A | L | K | G | G | L | D | F | V | . |
D | D | E | N | I | N | S | Q | P | F | M | R | W | R | E | R | Y | L | F | T | M | E | A | V | N | K | A | S | A | A | T | G | E | V | K | G | H | Y | L | N | V | T | A | A | T | M | E | E | M | Y | A | R | A | N | F | A | K | E |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | B |
| . |
|
| T | T |
| S | S | B | T | T | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| B |
|
|  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
. | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
  |
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
. | . | 100 | . | . | . | . | . | |
|
|
|
. | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|  | . | . | . | . |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | E | F | L | I | E | A | S | D | L | . |
. |
. |
. |
G | V | V | N | M | C | A | E | . |
. |
. |
. |
R | K | L | P | F | V | A | G | H | A | L | N |
Query Conservation |   |
  |
|   |
|   |
|
|
|   |
|   | . | . | . | . |
|   |   |   |   |   |   |   | . | . | . | . |   |   |   |
|   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
| . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|
|   | . |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |
Template Sequence |   |
L | G | S | V | I | I | M | I | D | . |
L | V | I | G | Y | T | A | I | Q | T | M | A | K | W | A | R | D | N | D | M | I | L | H | L | H | R | A | G | N |
Template Known Secondary structure |   |
T | T |
| S |  |  |  |  |  | . | G | G | G |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| T | T | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
| . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
260 | . | . | . | . | . | . | . | . | |
. | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|