Job Description P45475 Confidence 65.59% Date Thu Jan 5 12:02:49 GMT 2012 Rank 309 Aligned Residues 109 % Identity 17% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		G	D	W	L	E	M	A	K	S	L	A	G	S	G	K	Q	I	V	L	S	T	L	A	L	V	Q	A	S	S	E	L	G	E	L	K	R	Y	V	E	N	G	E	F	L	I	E	A	S	D	L	G	V	V	N	M	C	A	E	R	K	L	P	F	.	V	A	G	H	A	L	N	C	Y	N	A	V	T	L	K	I
Query Conservation																																																																	.
Alig confidence																						.	.	.	.																			.																					.
Template Conservation																						.	.	.	.																			.
Template Sequence		R	H	W	H	A	F	D	K	S	V	G	D	Y	P	H	L	I	C	Y	A	.	.	.	.	V	K	A	N	S	N	L	G	V	L	N	T	L	A	R	L	G	S	.	G	F	D	I	V	S	V	G	E	L	E	R	V	L	A	A	G	G	D	P	S	K	V	V	F	S	G	V	G	K	T	E	A	E	M	K	R
Template Known Secondary structure											T		S	S								.	.	.	.	G	G	G													T	T		.					S	S										T	T			G	G	G						T	T
Template Predicted Secondary structure																						.	.	.	.																			.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	K	Q	G	M	M	R	W	C	M	P	V	E	L	S	R	D	W	L	V	N	L	L	N	Q	C	D	E	L	G	I	R	N	Q	F	E	V	E	V	L	S
Query Conservation
Alig confidence																													.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		A	L	Q	L	K	I	K	C	F	N	V	E	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	.	.	.	.	.	.	.	G	V	K	A	P	I	S	L
Template Known Secondary structure					T	T		S						S															.	.	.	.	.	.	.	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions