Job Description P45475 Confidence 43.27% Date Thu Jan 5 12:02:49 GMT 2012 Rank 456 Aligned Residues 140 % Identity 15% Template c1knwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase Resolution 2.10 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	A	V	C	S	K	R	R	A	T	K	V	G	D	W	L	E	M	A	K	S	L	A	G	S	G	K	Q	I	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	L	A	L	V	Q	A	S	S	E	L	G	E	L	K	R	Y	V	E	N	G	E	F	L	I	E	A	S	D	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																						.	.	.																																																		.
Template Sequence		P	H	S	L	F	S	T	D	T	D	L	T	A	E	N	L	L	R	L	P	.	.	.	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L
Template Known Secondary structure					T	T	T		S	S	S											.	.	.					S	S															T	T	T	T	S	S						G	G	G													T	T		.						S
Template Predicted Secondary structure																						.	.	.																																																		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		G	V	V	N	M	C	A	E	R	K	L	P	F	V	.	.	.	.	.	A	G	H	A	L	N	C	Y	N	A	V	T	L	K	I	L	L	K	Q	G	M	M	R	W	C	M	P	V	E	L	S	R	D	W	L	V	N	L	L	N	Q	C	D	E	L	G	I	R	N	Q	F	E	V	E	V	L	S	Y	G	H	L
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.																						.					.	.	.															.	.	.	.	.	.
Template Conservation																																										.					.	.	.															.	.	.	.	.	.
Template Sequence		G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	.	.	.	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	.	.	.	.	.	.	G	H	R	V	W	L	R	V	N	P	G	F
Template Known Secondary structure										T	T			T	T	T		T	T	S						S														T		.					.	.	.	S	S											S	T	.	.	.	.	.	.	T										S
Template Predicted Secondary structure																																										.					.	.	.															.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	Y	S	A	R	C	F	T	A	R	S	E	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K
Template Known Secondary structure			S	S		T	T	S			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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