Job Description P77546 Confidence 97.69% Date Thu Jan 5 12:30:26 GMT 2012 Rank 163 Aligned Residues 140 % Identity 20% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		S	G	I	Q	P	L	H	R	K	C	S	F	S	N	Y	Q	V	Q	N	E	G	Q	R	Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence															.	.	.	.											.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation															.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		H	K	R	V	N	E	A	R	T	Y	P	F	T	.	.	.	.	L	D	P	F	Q	D	T	A	I	S	.	.	.	.	.	.	.	.	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L
Template Known Secondary structure		T				S		S	S			S	S		.	.	.	.											.	.	.	.	.	.	.	.			T	T	T									S	S	S																T	T								S	S
Template Predicted Secondary structure															.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
			138	.	140	.	.	.	.	.	.	.	.	.	150	.	.																		.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query SS confidence		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query Sequence		.	A	D	V	M	S	A	L	H	A	S	Y	D	D	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	E	K	F	L	R	E	L	C	.	.	.	.	.	.	.	E	V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	Q	V	V	L	H	Q	I	V	D	R	R
Query Conservation		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.														.	.
Template Conservation																																																																	.	.
Template Sequence		S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	.	.	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L
Template Known Secondary structure													T	S	S						S	S		B				S		S																	S	S												T	G	G	G	T	.	.	T	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		T	A	S	M	R	S	V	G	M	L	T	N	L	.	.	N	Y	E	A	M	K	T	L	L	G
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	A	M	E	F	A	E	W	I	C
Template Known Secondary structure		S		T	T	S								S		S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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