Job Description P77546 Confidence 98.52% Date Thu Jan 5 12:30:26 GMT 2012 Rank 84 Aligned Residues 149 % Identity 19% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.										.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	A	D	V	M	S	A	L	H	A	.	.	.	.	.	.	.	.	.	S	Y	D	D	G	Q	S	G	E
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence																																															.																	.	.	.	.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	.	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K
Template Known Secondary structure																T	S		S								T	T	S	S																S	.							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.											.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		K	F	L	R	E	L	C	E	V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	Q	V	V	L	H	Q	I	V	D	R	R	T	A	S	M	R	.	.	.	.	.	.	.	.	.	.	S	V	G	M	L	T	N	L	N	Y	E	A	M	K	T	L	.	.	L	G	E	R	I	M	D	R	M	T
Query Conservation																																												.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence																							.	.																				.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																							.	.
Template Sequence		K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	.	.	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S
Template Known Secondary structure								T	T	T	S						T	G	G	G	S		.	.														S					B	T																S	S								T	T	S	S									T
Template Predicted Secondary structure																							.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	G	G	R	W	V	N	F	N	W	E	S	W	R	P
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	F	Q	I	Y	L	P	P	L	R	E	R	G
Template Known Secondary structure		.	.	.	S								G	G	G	S	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					294	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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