Job Description P77546 Confidence 99.63% Date Thu Jan 5 12:30:26 GMT 2012 Rank 9 Aligned Residues 158 % Identity 18% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	R	Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	A	D	V	M	S	A	L	H	A	S	Y	D	D	G	Q	S	G	E	K	F	L	R	E
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R
Template Known Secondary structure																T	S						S								T	T	S													T	.	.	.	T																T	T	T		T							T	T	T	T	T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Query Sequence		L	C	E	V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	V	L	H	Q	I	V	D	R	R	T	A	S	M	R	S	V	G	M	.	L	T	N	L	N	Y	E	A	M	K	T	L	L	G	E	R	I	M	D	.	.	R	M	T	M	N
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																						.																				.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																						.					.	.	.	.	.											.	.			.	.
Template Conservation																																																												.	.	.	.	.															.	.
Template Sequence		Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	.	.	.	.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	.	.	D
Template Known Secondary structure		T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S								S		.	.	.	.	.	G	G	G			G	G	G	T	S	T	T	T	S	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.															.	.
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.						.	.	.	.	630	.	.	.	.	.	.	.	.	.			640
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	R	W	V	N	F	N	W	E	S	W	R	P	N	V	V	Q	P	G	I	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K
Template Known Secondary structure											T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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