Job Description P77546 Confidence 97.46% Date Thu Jan 5 12:30:26 GMT 2012 Rank 200 Aligned Residues 159 % Identity 16% Template c2xgjA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		L	N	R	S	G	I	Q	P	L	H	R	K	C	S	F	S	N	Y	Q	V	Q	N	E	G	Q	R	Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	.	V
Query Conservation																																																																																.
Alig confidence																		.	.	.	.															.	.	.	.	.	.	.	.																																					.
Template Conservation																		.	.	.	.															.	.	.	.	.	.	.	.
Template Sequence		I	A	E	H	K	R	V	N	E	A	R	T	Y	P	F	T	.	.	.	.	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	.	.	.	.	.	.	.	.	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I
Template Known Secondary structure		G	G	G				S	S		S				S	S		.	.	.	.															.	.	.	.	.	.	.	.	T									T	T	S																T	T								S	S
Template Predicted Secondary structure																		.	.	.	.															.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.									.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.																						.	.	.	.	.	.	.	160								.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query Sequence		A	D	V	M	S	A	L	H	A	S	Y	D	D	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	E	K	F	L	R	E	.	.	.	.	.	.	.	L	C	E	V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	Q	V	V	L	H	Q	I	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.																						.	.
Template Conservation																																																																										.	.
Template Sequence		K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	.	.	V	V	W	E	E	T
Template Known Secondary structure																	S							S	S					T	T		S																T		T	T	G	G	G								T	G	G	G	G	G		T	T	T		.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	T	A	S	M	R	S	V	G	M	L	T	N	L	N	Y	E	A	M	K	T	L	L	G	E	R	I	M	D	R	M	T	M	N	G	G	R	W	V	N	F	N	W
Query Conservation
Alig confidence																					.	.							.
Template Conservation																					.	.							.
Template Sequence		I	I	L	L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	.	.	A	M	E	F	A	E	.	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F
Template Known Secondary structure					S		T	T											T	T	.	.							.							T	S
Template Predicted Secondary structure																					.	.							.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions