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Job Description | P77546 | Confidence | 98.26% | Date | Thu Jan 5 12:30:26 GMT 2012 |
Rank | 102 | Aligned Residues | 137 |
% Identity | 11% | Template | c2j37W_ |
PDB info |
PDB header:ribosome | Chain: W: PDB Molecule:signal recognition particle 54 kda protein |
PDBTitle: model of mammalian srp bound to 80s rncs
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Resolution | 8.00 Å |
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98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
M | T | G | C | T | N | F | A | F | S | G | K | P | G | T | G | K | N | H | L | A | A | A | I | G | N | R | L | L | K | D | G | Q | T | V | I | V | V | T | V | A | D | . |
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Y | D | D | G | Q | S | G | E | K | F | L | R | . |
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Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
P | T | K | G | N | V | I | M | F | V | G | L | Q | G | S | G | K | T | T | T | C | S | K | L | A | Y | Y | Y | Q | R | K | G | W | K | T | C | L | I | C | A | D | T | F | R | A | G | A | F | D | Q | L | K | Q | N | A | T | K | A | R | I | P | F | Y | G | S | Y | T | E | M | D | P | V | I | I | A | S | E | G | V | E |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
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160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
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E | L | C | E | V | D | L | L | V | L | D | E | I | G | I | Q | R | E | T | K | N | E | Q | V | V | L | H | Q | I | V | D | R | R | T | A | S | M | R | S | V | G | M | L | T | N | L | N | Y | E | A | M | K | T | L | L | G | E | R | I | M | D | R | M | T | M | N | G | G | R | W | V | N | F | N | W | E | S |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
K | F | K | N | E | N | F | E | I | I | I | V | D | T | S | G | R | H | K | Q | E | D | S | L | F | E | E | M | L | Q | V | A | N | A | I | Q | P | D | N | I | V | Y | V | M | D | A | S | I | G | Q | A | C | E | A | Q | . |
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A | K | A | F | K | D | K | V | D | V | A | S | V | I | V | T | K | L | D | G | H | A |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | |
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. | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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