Job Description P77546 Confidence 98.97% Date Thu Jan 5 12:30:26 GMT 2012 Rank 50 Aligned Residues 155 % Identity 17% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	A	D	V	M	S	A	L	H	A	S	Y	D	D	G	Q	S	G	E	K	F	L	R	E	L	C	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P	G	R	F	E	R	A
Template Known Secondary structure															T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					B							T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.											.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.																																		.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence		.	.																																		.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		.	.	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	Q	V	V	L	H	Q	I	V	D	R	R	T	A	S	M	R	.	.	.	.	.	.	.	.	.	.	S	V	G	M	L	T	N	L	N	Y	E	A	M	K	T	L	.	.	L	G	E	R	I	M	D	R	M	T	M	N	G	G	R	W	V
Query Conservation		.	.																																		.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence		.	.													.	.																				.	.	.	.	.	.	.	.	.	.																	.	.											.	.	.
Template Conservation																.	.																																																										.	.	.
Template Sequence		D	G	G	T	L	F	L	D	E	L	A	T	A	P	.	.	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	.	.	.	F	D	V	V
Template Known Secondary structure		T	T	S						S	G	G	G	S		.	.														S						S	S	S														S	S									T	S	S										.	.	.	S
Template Predicted Secondary structure																.	.																																																										.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	N	W	E	S	W	R	P	N	V	V	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	P	P	L	R	E	R	E	S	D	I	M	L
Template Known Secondary structure						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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