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Job DescriptionP77546
Confidence99.56%DateThu Jan 5 12:30:26 GMT 2012
Rank16Aligned Residues176
% Identity18%Templatec1xwiA_
PDB info PDB header:protein transportChain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90....... ..100.........110.........120.........130.....
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Query Sequence  GIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADEL. . . . . . . MTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVV
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Template Sequence  AIVIERPNVKWSDV. AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA. . NNSTFFSI
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   123......130...... ...140.........150.........160.........170.........180.........190. ........
 
   136...140.........150.........160.........170........ .180.........190.........200. ...
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Query Sequence  TVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRET. . . . . . . . . KNEQVVLHQIVDRRTASMRSVGM. . LTN
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Template Sequence  SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN
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   200.........210.........220.........230.........240.........250.........260.........270.........
 
   205....210.........220.........230.........240........
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Query Sequence  LNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
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Template Sequence  I. . . . . PWVLDSAIRRRF. . EKRIYIPLPEPHARAAMFKLHLGT
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   280 .........290.. .......300.........310......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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