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Job DescriptionP77546
Confidence99.44%DateThu Jan 5 12:30:26 GMT 2012
Rank23Aligned Residues180
% Identity13%Templatec1s3sA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90. ........100.........110.........120.........130...
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Query Sequence  RSGIQPLHRKCSFSNYQVQNEGQRYALSQAK. . . . . . . SIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVI
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Template Sequence  REDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET. . . GAFFF
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S

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   191........200.........210.........220.........230.........240.........250.........260.. .....
 
   134.....140.........150.........160.........170..... ....180.........190.........200. ..
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Query Sequence  VVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQ. . . . . . . . . RETKNEQVVLHQIVDRRTASMRSVGM. LT
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Template Sequence  LINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT
Template Known Secondary structure  TS
TTT
STGGGT


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   268.270.........280.........290.........300.........310.........320.........330.........340.......
 
   204.....210.........220.........230.........240........
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Query Sequence  NLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
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Template Sequence  NR. . . . . PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN
Template Known Secondary structure  S
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   348. 350.........360.........370.........380.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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