Job Description P77546 Confidence 98.80% Date Thu Jan 5 12:30:26 GMT 2012 Rank 61 Aligned Residues 202 % Identity 20% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	W	Q	L	S	E	G	Q	K	R	C	E	E	I	N	R	Q	N	R	Q	L	R	V	E	K	I	L	N	R	S	G	I	Q	P	L	H	R	K	C	S	F	S	N	Y	Q	V	Q	N	E	G	Q	R	Y	A	L	S	Q	A	K	S	I	A	D	E	L	M	T	G	C	T	N	F	A	F	S	G	K	P	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.																											.	.	.	.
Template Conservation																																					.	.	.	.	.	.																											.	.	.	.
Template Sequence		K	P	C	M	L	E	E	I	E	L	T	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	.	.	.	.	.	.	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	.	.	.	.	P	V	L	I	T	G	E	S	G
Template Known Secondary structure			S																																T	T	.	.	.	.	.	.								S														T	T			S	.	.	.	.							S	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.
Query Sequence		T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	A	D	V	M	S	A	L	H	A	S	Y	D	D	G	Q	S	G	E	K	F	.	.	.	.	.	.	.	.	.	L	R	E	L	C	E	V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	Q
Query Conservation																																																.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																																																												.	.
Template Sequence		V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	.	.	L	E	A	Q
Template Known Secondary structure		S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T			S		B							T	T	T	S						S	G	G	G			.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.
		183	.	.	.	.	.	.	190	.											.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																							.	.																												.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.																							.	.																												.	.	.	.
Query Sequence		V	V	L	H	Q	I	V	D	R	.	.	.	.	.	.	.	.	.	.	R	T	A	S	M	R	S	V	G	M	L	T	N	L	N	Y	E	A	M	K	T	L	.	.	L	G	E	R	I	M	D	R	M	T	M	N	G	G	R	W	V	N	F	N	W	E	S	W	R	P	N	.	.	.	.	V	V	Q	P	G	I
Query Conservation											.	.	.	.	.	.	.	.	.	.																							.	.																												.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																							.	.											.	.	.															.	.	.	.
Template Conservation																																																							.	.	.
Template Sequence		A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	.	.	.	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L
Template Known Secondary structure											S					B	T			S													S	S								T	T	S	S									T	.	.	.	T								G	G	G
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		247	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		326	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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