Job Description P77546 Confidence 96.37% Date Thu Jan 5 12:30:26 GMT 2012 Rank 400 Aligned Residues 108 % Identity 12% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.												.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.
Predicted Secondary structure																																							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence																																							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		F	A	F	S	G	K	P	G	T	G	K	N	H	L	A	A	A	I	G	N	R	L	L	K	D	G	Q	T	V	I	V	V	T	V	A	D	V	.	.	.	.	M	S	A	L	H	A	S	.	.	.	.	.	.	.	.	.	.	.	Y	D	D	G	Q	S	G	E	K	F	L	R	.	.	.	.	.	E	L	C	E
Query Conservation																																							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence										.	.	.						.																					.	.	.	.								.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation										.	.	.						.
Template Sequence		I	M	L	V	G	V	Q	G	.	.	.	T	T	A	G	K	.	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P	V	Y	G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K
Template Known Secondary structure							S			.	.	.						.								T	T											S	S															T							T	T																		T	T
Template Predicted Secondary structure										.	.	.						.
Template SS confidence
		101	.	.	.	.	.	.	.				.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		V	D	L	L	V	L	D	E	I	G	I	Q	R	E	T	K	N	E	.	.	Q	V	V	L	H	Q	I	V	D	R	R	T	A	S	M	R	S	V	G	M	L	T	N	L	N	Y	E	A	M	K	T	L	L	G
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	K
Template Known Secondary structure			S									S			T	T																			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions