Job Description P76359 Confidence 94.88% Date Thu Jan 5 12:22:19 GMT 2012 Rank 183 Aligned Residues 111 % Identity 12% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		W	W	P	A	T	Y	C	S	R	V	S	G	Y	R	D	I	L	P	E	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	S	V	D	E	Y	F	W	R	H	I	L	.	.	Q	C	G	H	Q	Q	V	L	F	V	V	T	Q	A	D	K	T	E	P	C	H	E	W	D	M	A	G	I	Q	P	S	P	A
Query Conservation																																															.	.
Alig confidence																																															.	.																					.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.
Template Sequence		W	D	T	A	G	Q	E	R	F	R	T	I	T	S	T	Y	Y	R	G	T	H	G	V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	P	E	R	K	.	.	.	.	.	.	.	.	V	V	E	T	E
Template Known Secondary structure					T	T	G	G	G		S	S			G	G	G	G	T	T		S								T	T																				T	T	S									T	T		G	G	G		.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.									.	130	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Q	N	I	R	E	K	T	E	A	V	F	R	L	F	R	P	V	H	P	V	V	A	V	S	A	R	T	G	W	E	L	D	T	L	V	S	A	L	M	T	A	L	P	D	H	A	A	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.
Template Sequence		D	A	Y	K	F	A	G	Q	M	G	I	.	.	.	.	.	.	.	.	.	Q	L	F	E	T	S	A	K	E	N	V	N	V	E	E	M	F	N	C	I	T	E	L	V	L	R	A	K	K	D
Template Known Secondary structure											T		.	.	.	.	.	.	.	.	.						B	T	T	T	T	B	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.										.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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