Job Description P76359 Confidence 98.15% Date Thu Jan 5 12:22:19 GMT 2012 Rank 49 Aligned Residues 121 % Identity 20% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	S	L	L	F	S	R	V	L	Y	R	E	.	.	.	.	.	.	.	.	.	.	.	.	W	W	P	A	T	Y	C	S	R	V	S	G	Y	R	D	I	L	P	E	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	S	V	D	E	Y	F	W	R	H	I	L	Q	C	G	H	Q	Q	V	L	F	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence		G	K	S	T	M	L	G	R	I	M	F	E	L	G	E	I	I	G	D	A	P	G	H	R	D	F	I	S	G	M	I	A	A	.	.	.	.	.	.	.	.	V	L	V	V	D	S	S	Q	N	N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S
Template Known Secondary structure		T																					S	S	S										.	.	.	.	.	.	.	.		S									S	S	T	T	S		S		S	S											S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.															.	.	.	.
Predicted Secondary structure																																								.	.	.						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	Q	A	D	K	T	E	P	C	H	E	W	D	M	A	G	I	Q	P	S	P	A	Q	A	Q	N	I	R	E	K	T	E	A	V	F	R	L	.	.	.	F	R	P	V	H	.	P	V	V	A	V	S	A	R	T	G	W	E	L	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	S	A
Query Conservation																																								.	.	.						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																		.	.	.						.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	K	L	D	L	M	S	W	S	.	.	.	.	.	.	.	.	.	.	.	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I	K	M	V	G	F	K	T	S	N	V	H	F	V	P	I	S	A	I	S	G	T	N	L	I	Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A
Template Known Secondary structure					G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.																T	T	T	S				G	G	G								S	S	S		S	S	S		S					G	G	G	G	T			S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.												.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		159	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	T	A	L	P	D	H	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	Q	L	V	P	P	E	K	P
Template Known Secondary structure				T	S				S		T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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