Job Description P76359 Confidence 95.44% Date Thu Jan 5 12:22:19 GMT 2012 Rank 164 Aligned Residues 123 % Identity 15% Template c3cpjB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi Resolution 2.35 Å

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		29	30	.	.	.	.	.	.	.	.	.	40																								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	S	L	L	F	S	R	V	L	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	W	P	A	T	Y	C	S	R	V	S	G	Y	R	D	I	L	P	E	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	S	V	D	E	Y	F	W	R	H	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	S	N	L	L	S	R	F	T	K	N	E	F	N	M	G	V	E	F	A	T	R	T	L	E	I	E	G	K	R	I	K	A	Q	I	W	D	T	A	G	Q	E	R	Y	R	A	I	T	S	A	Y	Y	R	G	A	V	G	A	L	I	V	Y	D	S	K	S	S	S	Y	E	N	C	N	H	W	L	S	E	L
Template Known Secondary structure		S																		S									T	T											T	T	T	T	T	T	T				G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	C	G	H	Q	Q	V	L	F	V	V	T	Q	A	D	K	T	E	P	C	H	E	W	D	M	A	G	I	Q	P	S	P	A	Q	A	Q	N	I	R	E	K	T	E	A	V	F	R	L	F	R	P	V	H	P	V	V	A	V	S	A	R	T	G	W	E	L	D	T	L	V	S	A	L	M	T	A	L	P	D
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.											.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.											.
Template Sequence		R	E	N	A	D	V	A	V	G	L	I	G	N	K	S	D	L	A	H	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	P	T	E	E	S	K	T	F	A	Q	E	N	Q	L	.	.	L	F	T	E	T	S	A	L	S	E	.	N	V	D	K	A	F	E	E	L	I	N	T	I	Y	Q
Template Known Secondary structure																G	G	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S												T	T		.	.											.														T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.											.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		166	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	P	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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