Job Description P76359 Confidence 95.44% Date Thu Jan 5 12:22:19 GMT 2012 Rank 166 Aligned Residues 118 % Identity 17% Template c2o52B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-4b; PDBTitle: crystal structure of human rab4b in complex with gdp Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.																		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query Sequence		G	K	S	L	L	F	S	R	V	L	Y	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	W	P	A	T	Y	C	S	R	V	S	G	Y	R	D	I	L	P	E	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	S	V	D	E	Y	F	W	R	H	I	L	.	.	.	Q	C
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Conservation
Template Sequence		G	K	S	C	L	L	H	Q	F	I	E	V	E	F	G	S	R	V	V	N	V	G	G	K	T	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	S	V	T	R	S	Y	Y	R	G	A	A	G	A	L	L	V	Y	D	I	T	S	R	E	T	Y	N	S	L	A	A	W	L	T	D	A	R	T	L	A	S
Template Known Secondary structure		S																					T	T											T	T	G	G	G	T	S								T	T		S								T	T							T												T
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	Q	Q	V	L	F	V	V	T	Q	A	D	K	T	E	P	C	H	E	W	D	M	A	G	I	Q	P	S	P	A	Q	A	Q	N	I	R	E	K	T	E	A	V	F	R	L	F	R	P	V	H	P	V	V	A	V	S	A	R	T	G	W	E	L	D	T	L	V	S	A	L	M	T	A	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Sequence		P	N	I	V	V	I	L	C	G	N	K	K	D	L	D	P	E	.	.	.	.	.	.	.	.	.	R	E	V	T	F	L	E	A	S	R	F	A	Q	E	N	.	.	.	.	.	.	.	.	E	L	M	F	L	E	T	S	A	L	T	G	E	N	V	E	E	A	F	L	K	C	A	R	T	I
Template Known Secondary structure		T	T										G	G	G	G	G	G	.	.	.	.	.	.	.	.	.			S												T	.	.	.	.	.	.	.	.	T								T	T	T		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions