Job Description P76141 Confidence 100.00% Date Thu Jan 5 12:19:32 GMT 2012 Rank 2 Aligned Residues 241 % Identity 23% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		L	E	Y	E	T	Q	L	R	R	Q	F	S	L	Q	H	V	R	V	I	P	G	L	A	D	A	D	.	V	G	G	R	L	G	I	G	A	A	H	M	L	M	S	L	L	Q	P	Q	Q	M	L	A	I	G	F	G	E	A	T	M	N	T	L	Q	R	L	S	G	F	I	S	S	Q	Q	I	R	L	V	T	L	S
Query Conservation																												.
Alig confidence																												.																																									.
Template Conservation																																																																					.
Template Sequence		V	Q	L	E	Q	K	L	V	E	K	F	N	L	K	R	A	L	I	S	L	D	Q	P	N	T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	.	V	T	Q	R	N	A	R	F	V	S	A	I
Template Known Secondary structure													T		S									S	S																						T	T								S													.											S	B
Template Predicted Secondary structure																																																																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.
		151	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		G	G	V	G	.	.	.	.	S	Y	M	T	G	I	G	Q	L	N	A	A	C	S	V	N	I	I	P	A	P	L	R	A	S	S	A	D	I	A	R	T	L	K	N	E	N	C	V	K	D	V	L	L	A	A	Q	A	A	D	V	A	I	V	G	I	G	A	V	S	Q	Q	D	D	A	T	I	I	R	S	G	Y
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																																														.	.
Template Conservation																																																																							.	.
Template Sequence		G	G	T	H	I	I	N	A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	V	G	I	G	D	X	D	E	.	.	N	S	H	X	V	K	L	G	F
Template Known Secondary structure			B																		T								S	B	S	B		S	S									T	S												T		S												.	.		T					T	T	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.
		227	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure								.															.
Query SS confidence								.															.
Query Sequence		I	S	Q	G	E	Q	.	L	M	I	G	R	K	G	A	V	G	D	I	L	G	.	Y	F	F	D	A	K	G	D	V	V	T	N	I	K	I	H	N	E	L	I	G	L	P	L	S	A	L	K	T	I	P	V	R	V	G	V	A	G	G	E	N	K	A	E	A	I	A	A	A	M	K	G	G	Y	I	N	A	L
Query Conservation								.															.
Alig confidence								.															.													.
Template Conservation																																				.
Template Sequence		F	T	P	K	E	F	V	E	A	R	L	N	D	G	I	V	G	D	I	G	G	F	D	F	F	K	L	D	G	T	D	A	D	T	.	L	X	R	G	R	V	I	G	L	E	X	E	D	L	R	Q	I	P	N	V	V	A	X	A	S	E	S	R	K	A	L	S	I	X	G	A	L	R	T	G	V	I	D	V	L
Template Known Secondary structure		S											T	T							T	T	T					T	T	S		B				.	G	G	G	G	G	B		B								T	S	S									G	G	G										T	S			S
Template Predicted Secondary structure																																				.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	Q	D	T	A	A	A	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	S	V	S	C	A	X	A	L	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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