 |
Job Description | P76141 | Confidence | 53.87% | Date | Thu Jan 5 12:19:32 GMT 2012 |
Rank | 440 | Aligned Residues | 114 |
% Identity | 11% | Template | c3d3uA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; |
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26
|
Resolution | 2.80 Å |
|
 |
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
. | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | H | M | L | M | S | L | L | Q | P | Q | Q | M | L | A | I | G | F | G | . |
E | A | T | M | N | T | L | Q | R | L | S | G | F | I | S | S | Q | Q | I | R | L | V | T | L | S | G | G | V | G | S | Y | M | T | G | I | G | Q | L | N | A | A | C | S | V | N | I | I | P | A | P | L | R | A | S | S | A | D | I | A |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|
|
| . |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|
|   |   |
| . | . |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . |
|   |   |
|
Template Sequence |   |
A | D | E | A | V | V | D | S | L | K | P | G | T | K | V | V | F | G | H | A | A | A | A | P | V | R | F | S | Q | A | M | Y | R | Q | . |
. |
R | E | K | L | E | N | I | T | V | F | H | M | L | Y | F | G | D | A | P | H | L | A | P | E | M | R | S | H | V | H | P | T | L | C | H | F | . |
. |
. |
. |
H | E | V | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |  |
|
| B | T | T |
|
|  |  |  |  |  |  |  |  |  | T | . | . | T | T | T |
|
| S |  |  |  |  |
| S |
| B | S | S |
|
| T | T | S | S | G | G | G | T | T | T |  |  |  |  |
|
|
| G | . | . | . | . | G | G |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|  | . | . | . | . |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
|
. | . | . | . |
  |
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | T | L | K | N | E | N | C | V | K | D | V | L | L | A | A | Q | A | A | D | V | A | I | V | G | I | G | A | V | S | Q | Q | D | D | A | T | I | I | R | S | G | Y | I | S | Q | G | E | Q | L | M |
Query Conservation |   |
  |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |
|
|
|
|   |
|   |   |
|   |   |
|   |   |
|   |   |
|
|
|   |
|   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
E | L | F | R | Q | G | F | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
P | L | D | V | A | V | V | Q | V | S | T | P | N | E | E | G | Y | C | S | F | G | V | S | C | D | Y | T | K | A | A | A | E | C |
Template Known Secondary structure |   |
 |  |  | T | T | S | S | S | . | . | . | . | . | . | . | . | . |
|
| S |  |  |  |  |  |  |  |
|
|
| T | T | S |  |  |  |
| T | T | B |
| B | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
108 | . | 110 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|