Job Description P63228 Confidence 99.88% Date Thu Jan 5 12:07:58 GMT 2012 Rank 64 Aligned Residues 154 % Identity 19% Template c3ed5A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yfnb; PDBTitle: the crystal structure of yfnb from bacillus subtilis subsp. subtilis2 str. 168 Resolution 1.72 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	S	V	P	A	I	F	L	D	R	D	G	T	I	N	V	D	H	G	Y	V	H	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	R	Y	R	T	L	L	F	D	V	D	D	T	I	L	D	F	Q	A	A	E	A	L	A	L	R	L	L	F	E	D	Q	N	I	P	L	T	N	D	X	K	A	Q	Y	K	T	I	N	Q	G	L	W	R	A	F	E	E	G	K	X	T	R	D	E	V	V	N	T	R	F	S	A	L	L	K	E	Y	G	Y
Template Known Secondary structure													B	T	T	T	B																	T	T																								T	T	S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	F	E	F	I	D	G	V	I	D	A	M	R	E	L	K	K	M	G	F	A	L	V	V	V	T	N	Q	S	G	I	A	R	G	K	F	T	E	A	Q	F	E	T	L	T	E	W	M	D	W	S	L	A	D	R	D	V	D	L	D	G	I	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	D	G	A	L	L	E	Q	K	Y	R	R	F	L	E	E	G	H	Q	L	I	D	G	A	F	D	L	I	S	N	L	Q	Q	Q	F	D	L	Y	I	V	T	N	G	V	S	H	T	Q	Y	K	R	L	R	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T				B		T	T										T	T	S								S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.														.
Query SS confidence																																				.														.
Query Sequence		Y	C	P	H	H	P	Q	G	S	V	E	E	F	R	Q	V	C	D	C	R	K	P	H	P	G	M	L	L	S	A	R	D	Y	L	.	H	I	D	M	A	A	S	Y	M	V	G	D	K	.	L	E	D	M	Q	A	A	V	A	A	N	V	G	T	K	V	L	V	R	T	G	K	P	I	T	P	E	A	E	N	A
Query Conservation																																				.														.
Alig confidence		.	.																																	.														.																											.	.
Template Conservation		.	.																																																																										.	.
Template Sequence		.	.	G	L	F	P	F	F	K	D	I	F	V	S	E	D	T	G	F	Q	K	P	X	K	E	Y	F	N	Y	V	F	E	R	I	P	Q	F	S	A	E	H	T	L	I	I	G	D	S	L	T	A	D	I	K	G	G	Q	L	A	G	L	D	T	C	W	X	N	P	D	X	K	P	N	V	P	.	.	E	I	I
Template Known Secondary structure		.	.	T		G	G	G		S					G	G	G	T	T	S		T	T											T	S	T	T			G	G	G						S		T	T	T	T							T	T								T	T					T	T	.	.
Template Predicted Secondary structure		.	.																																																																										.	.
Template SS confidence
				137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	W	V	L	N	S	L	A	D	L	P	Q	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	Y	E	I	R	K	L	E	E	L	Y	H	I	L
Template Known Secondary structure			S				S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions