Job Description P0AB74 Confidence 94.75% Date Thu Jan 5 11:14:47 GMT 2012 Rank 151 Aligned Residues 223 % Identity 16% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50																	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.											.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.											.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	I	I	S	T	K	Y	L	L	Q	D	A	Q	.	A	N	G	Y	A	V	P	A	F	N	.	.	.	I	H	N	A	E	T	I	Q	A	I	L	E	V	C	S	E	M	R	S	P	V	I	.	L	A	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	T	F	K	H	I	A	L
Query Conservation																.											.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.											.											.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.
Template Sequence		M	N	.	.	R	Y	Q	A	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P
Template Known Secondary structure				.	.													T	B									T	T	S	S															T	T		S	S										T	T																T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.						.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure															.											.	.	.	.	.
Query SS confidence															.											.	.	.	.	.
Query Sequence		E	E	I	Y	A	L	C	S	A	Y	S	T	T	.	Y	N	M	P	L	A	L	H	L	D	.	.	.	.	.	H	H	E	S	L	D	D	I	R	R	K	V	H	A	G	V	R	S	A	M	I	D	G	S	H	F	P	F	A	E	N	V	K	L	V	K	S	V	V	D	F	C	H	S	Q	D	C	S	V	E	A
Query Conservation															.											.	.	.	.	.
Alig confidence															.											.	.	.	.	.																						.	.									.	.	.	.
Template Conservation																																																				.	.									.	.	.	.
Template Sequence		D	I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	.	.	A	D	V	P	T	N	E	S	.	.	.	.	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F
Template Known Secondary structure																T	T	S													T	T													T							.	.	T	T	S		G	G	G		.	.	.	.										T	T
Template Predicted Secondary structure																																																				.	.									.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	G	R	L	G	G	V	E	D	D	M	S	V	D	A	E	S	A	F	L	T	D	P	Q	E	A	K	R	F	V	E	L	T	G	V	D	S	L	A	V	A	I	G	T	A	H	G	L	Y	S	K	T	P	K	I	D	F	Q	R	L	A	E	I	R	E	V	V	D	V	P	L	V	L	H	G	A	S	D	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	.	.	.	.	.	.	.	A	P	V	H	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	A	P	P	A	L	L	G	F	G	I	S	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			S												S								.	.	.	.	.	.	.					.	.	.	.									T	T								S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.					.	.	.	.
Template SS confidence
																		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	E	F	V	R	R	T	I	E	L	G	V	T	K	V	N	V	A	T	E	L	K	I	A	F	A	G	A	V	K	A	W	F	A	E	N	P	Q	G	N	D	P	R	Y	Y	M	R	V	G	M	D	A	M	K	E
Query Conservation
Alig confidence			.																						.	.	.	.	.	.	.	.									.	.
Template Conservation			.																						.	.	.	.	.	.	.	.									.	.
Template Sequence		P	.	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	.	.	.	.	.	.	.	.	K	I	I	E	T	H	L	D	.	.	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A
Template Known Secondary structure			.									T	T		S					S	S				.	.	.	.	.	.	.	.						T	T	T	.	.
Template Predicted Secondary structure			.																						.	.	.	.	.	.	.	.									.	.
Template SS confidence
		217		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.									.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions