Job Description P0AB74 Confidence 95.89% Date Thu Jan 5 11:14:47 GMT 2012 Rank 112 Aligned Residues 221 % Identity 16% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																		.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure														.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	Y	L	L	Q	D	A	Q	A	N	G	.	.	.	.	.	.	Y	A	V	P	A	F	N	I	H	N	A	E	T	I	Q	A	I	L	E	V	C	S	E	M	R	S	P	V	I	L	A	G	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	F	K	H	I	A	L	E	E	I
Query Conservation														.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.							.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		I	S	D	K	F	T	E	L	K	E	K	R	E	K	A	L	V	S	Y	L	M	V	G	Y	.	.	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V
Template Known Secondary structure													T	B									T	T	S	.	.	S															T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		63	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure													.								.	.	.	.	.
Query SS confidence													.								.	.	.	.	.
Query Sequence		Y	A	L	C	S	A	Y	S	T	T	Y	.	N	M	P	L	A	L	H	.	.	.	.	.	L	D	H	H	E	S	L	D	D	I	R	R	K	V	H	A	G	V	R	S	A	M	I	D	G	S	H	F	P	F	A	E	N	V	K	L	V	K	S	V	V	D	F	C	H	S	Q	D	C	S	V	E	A	E	L	G
Query Conservation													.								.	.	.	.	.
Alig confidence													.								.	.	.	.	.																								.	.									.	.	.	.															.	.	.
Template Conservation																																																	.	.									.	.	.	.															.	.	.
Template Sequence		L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	.	.	P	D	L	P	P	E	E	A	.	.	.	.	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	.	.	.	V	P
Template Known Secondary structure													T	T	S																										T	T							.	.	T	T							.	.	.	.										T	T				.	.	.
Template Predicted Secondary structure																																																	.	.									.	.	.	.															.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	G	V	E	D	D	M	S	V	D	A	E	S	A	F	L	T	D	P	Q	E	A	K	R	F	V	E	L	T	G	V	D	S	L	A	V	A	I	G	T	A	H	G	L	Y	S	K	T	P	K	I	D	F	Q	R	L	A	E	I	R	E	V	V	D	V	P	L	V	L	H	G	A	S	D	V	P	D	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.								.																									.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.								.																									.
Template Sequence		L	G	A	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	R	K	R	I	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	.	.	.	.	.	.	.	T	G	Y	E	R	I	K	.	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	.
Template Known Secondary structure					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S						S	S	.	.	.	.	.	.	.								.												S						S	S			S			.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.								.																									.
Template SS confidence
		153	.	.	.	.														.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	R	R	T	I	E	L	G	V	T	K	V	N	V	A	T	E	L	K	I	A	F	A	G	A	V	K	A	W	F	A	E	N	P	Q	G	N	D	P	R	Y	Y	M	R	V	G	M	D	A	M	K	E
Query Conservation
Alig confidence						.																.	.	.	.	.	.	.	.										.
Template Conservation						.																.	.	.	.	.	.	.	.										.
Template Sequence		H	A	R	E	.	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	.	.	.	.	.	.	.	.	K	L	A	G	Q	K	K	I	E	.	D	L	G	N	L	V	K	E	L	K	E	G	L	R	E
Template Known Secondary structure						.			T	T	S	S										.	.	.	.	.	.	.	.					T	T				.												T	T	B
Template Predicted Secondary structure						.																.	.	.	.	.	.	.	.										.
Template SS confidence
		220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.									.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions