Job Description P0AEY5 Confidence 99.64% Date Thu Jan 5 11:24:38 GMT 2012 Rank 30 Aligned Residues 123 % Identity 20% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	L	I	I	N	G	A	K	K	F	A	H	S	N	G	Q	L	N	D	T	L	T	E	V	A	D	G	T	L	R	D	L	G	H	D	V	R	I	V	R	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Y	D	V	K	A	E	V	Q	N	F	L	W	A	D	V	V	I	W	Q	M
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.				.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.				.	.	.	.	.	.
Template Sequence		N	I	L	V	L	F	Y	G	.	Y	G	S	.	.	.	.	.	.	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S
Template Known Secondary structure										.	S	S		.	.	.	.	.	.																T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S
Template Predicted Secondary structure										.				.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.		.	.	.							.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	W	W	M	G	A	P	W	T	V	K	K	Y	I	D	D	V	F	T	E	G	H	G	T	L	Y	A	S	D	G	R	T	R	K	D	P	S	K	K	Y	G	S	G	G	L	V	Q	G	K	K	Y	M	L	S	L	T	W	N	A	P	M	E	A	F	T	E	K	D	Q	F	F	H	G	V	G	V	D	G	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	R	Y	G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	.	.	.	.	.	.	.	.	.	.	.	.	V	H	G	G	H	E	T	T
Template Known Secondary structure				B	T	T	B											T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T	T	T									B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	P	F	H	K	A	N	Q	F	L	G	M	E	P	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P
Template Known Secondary structure						T							T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions