Return to main results Retrieve Phyre Job Id

Job DescriptionP77789
Confidence99.83%DateThu Jan 5 12:32:52 GMT 2012
Rank11Aligned Residues142
% Identity27%Templated2uy6b1
SCOP infoCommon fold of diphtheria toxin/transcription factors/cytochrome f Bacterial adhesins Pilus subunits
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.. .......90.........100
Predicted Secondary structure 























.....








Query SS confidence 
























































. . . . .

















Query Sequence  VIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGT. . . . . TGVRVAFNGIEDAENNTL
Query Conservation   
 
 
 
   

 
        
 

 
                
 
 
  
    .....                  
Alig confidence 



































.



















.....

















Template Conservation   
 
 
 
   

 
        
 

 
       .        
 
 
  
                 
         
Template Sequence  KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEA. GGVSKPMDLDIELVNCDITAFKGGKGTVKLAFTGPIVNGHSDE
Template Known Secondary structure 













SSTT








.T




SS

TTTB



S

TT
Template Predicted Secondary structure 













.























Template SS confidence 















































































   10.........20.........30.........40..... ....50.........60.........70.........80........
 
   101........110.........120.........130.........140.........150..... ....160.........170......
Predicted Secondary structure 

























...






Query SS confidence 






















































. . .




















Query Sequence  LKLDEGSNTASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKS. . . TQKSVNPGLVRASATFTLEFQ
Query Conservation           
 



 
                                 
    ...    
  
   
  
  
 

Alig confidence 

....



























....
















...




















Template Conservation    ....   
 



 
                 ....          
 
           
  
   
  
  
 

Template Sequence  LD. . . . TNGGTGLAIVVQGAGKNVVFDGSEGDAN. . . . TLKDGENVLHYTAVVKKSSAVGAAVTEGAFSAVANFNLTYQ
Template Known Secondary structure  ....
BSSS

SSSB




TT....
B
SS



STT



SS

B



Template Predicted Secondary structure  ....
















....













Template SS confidence 














































































   93. .....100.........110.........120.. .......130.........140.........150.........160...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions