Job Description P77789 Confidence 99.90% Date Thu Jan 5 12:32:52 GMT 2012 Rank 6 Aligned Residues 156 % Identity 26% Template c2jtyA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:type-1 fimbrial protein, a chain; PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		Y	S	A	L	S	A	D	S	V	I	K	I	S	G	R	V	L	D	Y	G	C	T	V	S	S	D	S	L	N	F	T	V	D	L	Q	K	N	S	A	R	Q	F	P	T	T	G	S	T	S	P	A	V	P	F	Q	I	T	L	S	E	C	S	K	G	T	.	T	G	V	R	V	A	F	N	G	I	E	D	A	E
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		A	A	T	T	V	N	G	G	T	V	H	F	K	G	E	V	V	N	A	A	C	A	V	D	A	G	S	V	D	Q	T	V	Q	L	G	Q	V	R	T	A	S	L	A	Q	E	G	A	T	S	S	A	V	G	F	N	I	Q	L	N	D	C	D	T	N	V	A	S	K	A	A	V	A	F	L	G	T	A	I	D	A
Template Known Secondary structure							S	S	S	S					S	S					S	S																		G	G	G		S	S						S													T	T	T		S										B	S	S	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		97	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		N	N	T	L	L	K	L	D	.	.	E	G	S	N	T	A	S	G	L	G	I	E	I	L	D	A	N	M	R	P	V	K	L	N	D	L	H	A	G	M	Q	W	I	P	L	V	P	E	Q	N	N	I	L	P	Y	S	A	R	L	K	S	T	Q	K	S	V	N	P	G	L	V	R	A	S	A	T	F	T	L	E
Query Conservation										.	.
Alig confidence										.	.																																	.	.																				.
Template Conservation																																												.	.																				.
Template Sequence		G	H	T	N	V	L	A	L	Q	S	S	A	A	G	S	A	T	N	V	G	V	Q	I	L	D	R	T	G	A	A	L	T	L	D	G	A	T	F	S	S	E	T	.	.	T	L	N	N	G	T	N	T	I	P	F	Q	A	R	Y	F	A	T	G	.	A	A	T	P	G	A	A	N	A	D	A	T	F	K	V	Q
Template Known Secondary structure		G	G	T	T	S	B				S		T	T	T	S		S	S								T	T	S		B			B	T	S								.	.				S															S	.	S				S
Template Predicted Secondary structure																																												.	.																				.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		175	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		158	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions