Job Description P39353 Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012 Rank 24 Aligned Residues 339 % Identity 18% Template c3v5nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																					.				.	.															.	.	.							.	.	.	.	.
Query SS confidence												.																					.				.	.															.	.	.							.	.	.	.	.
Query Sequence		M	I	N	Y	G	V	V	G	V	G	.	Y	F	G	A	E	L	A	R	F	M	N	M	H	D	N	A	K	I	T	C	.	V	Y	D	.	.	P	E	N	G	E	N	I	A	R	E	L	Q	C	I	.	.	.	N	M	S	S	L	D	.	.	.	.	.	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T
Query Conservation												.																					.				.	.															.	.	.							.	.	.	.	.
Alig confidence												.																					.				.	.															.	.	.							.	.	.	.	.
Template Conservation
Template Sequence		R	I	R	L	G	X	V	G	G	G	A	F	I	G	A	V	H	R	I	A	A	R	L	D	D	H	Y	E	L	V	A	G	A	L	S	S	T	P	E	K	A	E	A	S	G	R	E	L	G	L	D	P	S	R	V	Y	S	D	F	K	E	X	A	I	R	E	A	K	L	K	N	G	I	E	A	V	A	I	V	T
Template Known Secondary structure									S																T	S											S	S												T			G	G	G	B		S													T	T			S						S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	Y	L	H	K	E	P	V	I	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	G	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C	H	T	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	H	V	H	Y	A	A	A	K	E	F	L	K	R	G	I	H	V	I	C	D	K	P	L	T	S	T	L	A	D	A	K	K	L	K	K	A	A	D	E	S	D	A	L	F	V	L	T	H	N	Y	T	G	Y	P	X	V	R	Q	A	R	E	X	I	E	N	G	D	I	G	A	V	R	L	V	Q	X	E	Y
Template Known Secondary structure			T	T	S										T	T	T							S	S	S		S	S															S	S							G	G	G	G	S												T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	W	E	N	K	Q	E	R	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G	G	N	L	A	H	S	G	P	G	F	G	N	E	D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	Q	D	W	L	T	E	N	G	G	S	T	G	D	I	G	T	H	A	Y	N	L	G	C	F	V	S	G	L	E	L	E	E	L	A	A	D	L	D	S	F	V	G	G	R	Q	L	D	D	N	A	H	V	L	X	R	F	R	E	K	D	G	T	R	A	K	G	X	L	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				T	T	S									T																											S	T	T			S													B	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		W	G	S	A	F	N	W	P	E	H	Y	.	.	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F	L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G	N	M	T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W
Query Conservation													.	.
Alig confidence													.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		C	S	Q	V	A	P	G	H	E	N	G	L	X	V	R	V	Y	G	T	K	G	G	L	E	W	T	Q	K	D	P	N	Y	L	W	Y	T	P	F	G	E	P	K	R	L	L	T	R	A	.	.	.	.	.	.	.	.	.	.	G	A	G	A	S	P	A	A	A	R	V	S	R	I	P	S	G	H	P	E	G	Y
Template Known Secondary structure				S			T	T		S	S									S	S							T	T	S	T	T							T	T	S							T	T	.	.	.	.	.	.	.	.	.	.	S	T	T							T	T			S		T	T	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.											.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		L	A	S	L	I	R	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A	A	T	L	S	R	S	Q	D	.	R	K	V	K
Query Conservation																																																					.
Alig confidence																											.	.																									.
Template Conservation																											.	.
Template Sequence		L	E	G	F	A	N	I	Y	S	E	A	A	R	A	I	Y	A	K	R	A	D	P	S	V	I	.	.	Y	P	T	I	D	D	G	X	R	G	X	T	F	V	D	A	C	V	R	S	S	E	R	N	G	A	W	I	K
Template Known Secondary structure																		T	T				T	T			.	.																							T	T	S			B
Template Predicted Secondary structure																											.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions